| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5691 |
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| Symbol | |
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| ID | 7975744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 404784 |
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| End bp | 406322 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796273 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_002947547 |
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| Protein GI | 239820362 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTCGCG GACCCTCCAT CACCGCCCGG ACCATGGCTT TCGTGGCCGT CGTCTGCCTC
AGCCTGCTGG CGATCGACTT CTGGAACAGC TGGGAGGCGC GCACCGACCA GCTCCAGCAG
ATGAACGTGG CCACGTCGAA CCTCTCGCGC GCCATGGCGC AGCAGGCCGA CGACACGATC
AAGAAGGCCG ACACCGTGCT GGTCGGCATG GTCGAGCGCG TGGAGCACGA CGGCACCGAT
CCATCCGACG TGGCGCGGCT TCGCCAGCTG CTGGCCCTGC GCGTTGCCGA GCTCCCCCAG
CTCGACGGCC TGCACATCTA CGACCAGGAC GGCAACTGGA TTGCGAACTC CCGCCCCACG
CGGCCGGAGA ACCTGAACAA CGCGGACCGC GAGTACTTCG CCTTCCACCG CACGCACGCA
GAGCGCGGAC CGCACATCGG CATTCCGGTT CAAAGCCGTA CCAGCGGCCG GCTGCTGGTG
CCGGTTTCGC GGCGCATCAA CCATGCGGAC GGCAGCTTTG CCGGCGTGGC GCTCGCGACG
ATCCACGTCG ACTTCTTCTC CAGGTTCTAC GACAGCCTGG ACATCGGCCA GGCCGGCGCC
GTGGCGCTGG TGCTCGAGAA CGGAACCATG ATGACCCGGC GGCCCTACAG CCCCGACATG
GTGGGACGGA ACATGCTGGA GACCCAGCTC TTTCGCTCCT ACGCCGCGCA TGGGCCGGTC
GGCACGGCCT ACATCAAGTC GGCGCAGGAC GGCGTGACAC GGTTGAACAG CTTCCGGCGC
CTGGACAACT ACCCGCTGTT CGTTTCCGCG GCGCTGTCCA AGGACGAGAT CCTGGCCAAC
TGGTGGCGCG ACACGCTGTG GCATTCGGGC GGCGTCGTTC TGCTGAGCCT GATCGTCGGC
TTCATCGGAT GGCGCCTGGT GCGGCAGTTC CAGCTCCAGA CCCGCACCGA GGCCGAGCTG
CGGCAGGCGC GCGATGCGCT CGAAACGCTC AACAAGACCC TCAACACCCT GGCCATGGAA
GACGGCCTGA CCGGGCTCGC GAACCGCAGG CAGTTCGACG TGGCGCTGGA CAGCGAATAC
AGCCGCGCCG CGCGCAACGC GAGCACGCTG GCGCTGATCA TGATGGATGT GGATTGCTTC
AAGCAATACA ACGACATCTA CGGCCATGCG GCGGGCGACG AGTGCCTGCA GACCATCGGC
CGCACCATCG CGCGCGTCGC GTCGCGGCGC CCGGGAGATC TTGCGGCGCG CTATGGCGGA
GAAGAGCTGG CGGTGCTGCT GCCGAACACC GACGTCGCGG GCGCCGTGAT GCTGGCCGAA
CGCATCCGCA GCGCCGTGCG CGAGCTGAAG ATCGAACATG CGGGCACCGC CGACGGATTC
GTGACGCTGA GCGCCGGCGT GGATGCGCTC AGTCCCCAGG CCGGCATCGG CGGCCAGCCC
AAGGAACTGA TCCGGTCCGC GGACAAGGCG CTGTACGCCG CCAAGTCGGG CGGACGCAAC
CGCGTGTGCG CCTCGACCGG ACAGCCGCTG GCGGCGTGA
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| Protein sequence | MIRGPSITAR TMAFVAVVCL SLLAIDFWNS WEARTDQLQQ MNVATSNLSR AMAQQADDTI
KKADTVLVGM VERVEHDGTD PSDVARLRQL LALRVAELPQ LDGLHIYDQD GNWIANSRPT
RPENLNNADR EYFAFHRTHA ERGPHIGIPV QSRTSGRLLV PVSRRINHAD GSFAGVALAT
IHVDFFSRFY DSLDIGQAGA VALVLENGTM MTRRPYSPDM VGRNMLETQL FRSYAAHGPV
GTAYIKSAQD GVTRLNSFRR LDNYPLFVSA ALSKDEILAN WWRDTLWHSG GVVLLSLIVG
FIGWRLVRQF QLQTRTEAEL RQARDALETL NKTLNTLAME DGLTGLANRR QFDVALDSEY
SRAARNASTL ALIMMDVDCF KQYNDIYGHA AGDECLQTIG RTIARVASRR PGDLAARYGG
EELAVLLPNT DVAGAVMLAE RIRSAVRELK IEHAGTADGF VTLSAGVDAL SPQAGIGGQP
KELIRSADKA LYAAKSGGRN RVCASTGQPL AA
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