Gene Vapar_5648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5648 
Symbol 
ID7975260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp354596 
End bp355213 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content68% 
IMG OID644796232 
Producthypothetical protein 
Protein accessionYP_002947506 
Protein GI239820321 
COG category[K] Transcription 
COG ID[COG5340] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0693813 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCACTGC ACTCCGATCC CACCCTGGAA CAAGCCGCGC TGGCACTCGC CGAGCGTCAG 
CCACTGCTGC GCGCGCGCGA TCTTGCAACG CACGGCCTGC CGACGGTGGT TCTCAGCCGG 
CTCGTGGCTG CCGGCAGGCT CGAACGCGTT GCCCGCGGCG TCTATAGCCT TCCGGGACGC 
GCGCTCAGCG AGCACCGGTC GCTGGCCGAA GCGGCGCTGC GGGTGCCGCG AGGCGTGGTG 
TGCCTGCTGT CGGCGCTGCG CGCCCACGGC ATTGGCACCC AGGCGCCGTT CGAGGTCTGG 
ATGGCGATTC CCCATCACTC GCCCACGCCG CGGCTGGACC AGCCTGCGCT TCGCGTGGTG 
CGCATGTCGG GGGCGGCTCT GACTGAAGGC GTCGATCTCG TCGACACCGA CGGCGTGCAA 
GTGCCGGTAT TCAATGCCGC CAAGACGGTG GCCGACTGCT TCAAGTACCG CAACAAGATC 
GGCCTGGACG TGGCACTGGA AGCGCTGCGA GATGGCTGGT CGCAGCGCAA GCTGTCGATG 
GATGCGCTCT GGCACTACGC AACGGTGAAT CGCGTGGCCA ATGTCATGCG GCCCTACCTG 
GAAAGCGTCA TTGCATGA
 
Protein sequence
MALHSDPTLE QAALALAERQ PLLRARDLAT HGLPTVVLSR LVAAGRLERV ARGVYSLPGR 
ALSEHRSLAE AALRVPRGVV CLLSALRAHG IGTQAPFEVW MAIPHHSPTP RLDQPALRVV 
RMSGAALTEG VDLVDTDGVQ VPVFNAAKTV ADCFKYRNKI GLDVALEALR DGWSQRKLSM 
DALWHYATVN RVANVMRPYL ESVIA