| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5551 |
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| Symbol | |
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| ID | 7975408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 255232 |
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| End bp | 256032 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796136 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947410 |
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| Protein GI | 239820225 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.614615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACATC CCAGCTCCAG GAAAGTCGCT CTTGTCACCG GGGCTTCCTC CGGCATCGGC
GCCGTCTATG CTGACCGCCT CGCCGCGCGC GGCTACGACC TCATTCTTGT CGCCCGTCGC
GCCGACCGCC TCGAAGCCCT CTGCGCGCAG GTCTCGAAGG CGCACGGCAT CCAGGCCGAG
GCGGTCGTTG CCGACCTGAC CCAGGACGAG GACCTGGCGC GGATCGAGAC GATCCTGTCC
ACCCGCGCCG ACCTGCGCGT GCTGGTGAAC AACGCCGGCA TTGCGCGGCT GGGACCGGTG
GCACAAAGGT CCGCGGGCGA CGCGCTGTCG CAGATCGCCC TCAACATCAC GGCGCTGACG
CGCCTGACCC AGGCGGTGGT GCCCGCCTTC ATCGCCAGAA ACGACGGGGT GATCATCAAC
ATCGCTTCGG TGCTGGGCAT CCATGCGCTG CCGATCAGCG CCGTCTACAG CGGCACCAAG
GCCTTCGTAC TGCAATACAG CCGGGGCCTG CAGGAAGAGC TGGCCGGCAC CGGCGTGAAG
GTTCAGCTGG TCCTGCCGGC CTCGACGGCC ACCGAGATCT GGGACCTGTC GGGCGTGCCT
CTGGCGGCCC TCAACAAGGA CGCCTTGATG ACCACCGAGC ACATGGTCGA TGCGGCGCTC
GCGGGATGGG ACCAGGGCGA AGCGGTCACG TGGCCGTCGG TCGCCGATGC AACGCTGTGG
GACAAGTACG AAGCGGCGCG CTCCGCATTG TTTGCCGCCA CCCAGGTGGG AACGCCGGCC
CCGCGCTACC GGATCGGCTG A
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| Protein sequence | MTHPSSRKVA LVTGASSGIG AVYADRLAAR GYDLILVARR ADRLEALCAQ VSKAHGIQAE
AVVADLTQDE DLARIETILS TRADLRVLVN NAGIARLGPV AQRSAGDALS QIALNITALT
RLTQAVVPAF IARNDGVIIN IASVLGIHAL PISAVYSGTK AFVLQYSRGL QEELAGTGVK
VQLVLPASTA TEIWDLSGVP LAALNKDALM TTEHMVDAAL AGWDQGEAVT WPSVADATLW
DKYEAARSAL FAATQVGTPA PRYRIG
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