| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5544 |
|---|
| Symbol | |
|---|
| ID | 7975401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 247871 |
|---|
| End bp | 248686 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796129 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002947403 |
|---|
| Protein GI | 239820218 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACT ATCGTCAACT TTTCGATCTG ACCGGCAAGA CGGCCGTGGT GCTGGGCGCG
GCGTCTGGCA TCGGCCAGGC GTCGGCCCAT GCATTGGGCG CGCTGGGTGC GCACGTCGTG
TGCGCGGACC GCGACACCGA CGGCGCAAAG GCCACGGCCG AGCAGATCAC GCAAGCGGGC
GCGGGCTCGG CCGAATGGCG CCGCACCGAC GCGGCCAGCG GCGCGGACAT CGCGGCTCTG
GCTGCGCACA CGCTGGCGGC GCGCGGGCGC ATCGACGTTG CCGTGGCAAC GCCGGCGCTC
AACATCCGCA AGCTCATCGT CGACTACACC GATGAAGAAT TCGACCAGGT CGTGAACCTG
AACCTCAAGG GGGCATTCCA CTTCATGCGC CGCTTCGGCG CGCCGATGAT GAAGCAGGGC
AGCGGCAGCC TCATCCTGTG TTCGTCGATG CGCGCGGTGA CGATCGAGCC CGGCCTCGGG
ATCTACGCGG CCACCAAGGC CGGCATCGCG CAGATGGTGA AGGGCTTCGC GTCGGAGGTG
GGCAGCTACG GCGTGCGCGT CAATGCGGTC ATGCCCAGCA TCATCGAAAC GAGGTTGACC
GCGCCGCTCA AGGAGCGCCC GGCCATCTAC GACACCTATG CCGCGCACAC CGTCTTCAAC
CGCTGGGGAC AGCCGTCGGA AGTGGGTTCG GCGGTGGCCT TTCTGGCGTC CGACGCGGCC
AGCTACATCA CGGGCAGTTC GCTGTCGGTG GACGGAGGCT GGACCGCGAT CGACGGTCCG
CCCACGGGGC TGACGGCGAC GCGGCCCTCC GAGTAG
|
|---|
| Protein sequence | MQNYRQLFDL TGKTAVVLGA ASGIGQASAH ALGALGAHVV CADRDTDGAK ATAEQITQAG
AGSAEWRRTD AASGADIAAL AAHTLAARGR IDVAVATPAL NIRKLIVDYT DEEFDQVVNL
NLKGAFHFMR RFGAPMMKQG SGSLILCSSM RAVTIEPGLG IYAATKAGIA QMVKGFASEV
GSYGVRVNAV MPSIIETRLT APLKERPAIY DTYAAHTVFN RWGQPSEVGS AVAFLASDAA
SYITGSSLSV DGGWTAIDGP PTGLTATRPS E
|
|---|
| |