| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5535 |
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| Symbol | |
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| ID | 7975392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 238519 |
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| End bp | 239361 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796120 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947394 |
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| Protein GI | 239820209 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACGC ATCGCCTGCT GATGAAACTC TGGAAGTCAC TGGTTGCACT GGTGATGGGC
TTCTTCATCG TCAATGTCGC ACTCATGGTG GCCGCGGTCG GCACCAGCTC GGTGGCCCGC
CGCTGGCTGG GCACCTGGCT GCCCGATGGC TACACGTTCA ACTGGTACCA GACCGCCTGG
CAGGAGTTCC AGCTCGACAG CGTGCTGTGG GTCACGATCG AGGTGGTCGC CGCCGTCGTG
TTCCTGTCGA TCCTGATCGG CGTGCCGGCG GCCTACGCGC TGGCGCGGCG CAACTTCCGC
GGCAAGAACC TGCTGATGGG GCTGTTCCTG CTGCCGCTGA TGATCCCGCC GATCACCTAC
GGCATTCCGC TGGCGACGGT GATGTACCAG GCGCACATCG CGGGCACCAT CTTCGGCGTG
ATCCTGGCGA ACATGATTCC GGCCGTGCCG TTCATGATCC TGGTGATGAC ACCGTTCATC
GAGCAGATCG ATGCCAACCT CGAATCCGCC GCCCGCGTGT TCGGCGCCAA CACCTTCAAG
CTGTTCTGGC ACGTGCTGCT GCCGCTGCTG GCGCCGGGCA TTCTGGCGGC CTCCCTGCTG
GTGCTGGTGC GCACCATCGG CATGTTCGAG CTGACCTTCC TGACGGCCGG CCCGGATTCG
CAGACGCTGG TGGTGGCCCT GTACTACGCG GTCTTCGCGG CGGGCGTTCG TGCGCCGCAG
TCGGTCGATG CAATGGCGAT GGTCTACATG GCGGTCACGC TGGCCTGGCT GCTGATCGCG
CTGCAATTCG TCAACCCGAC GCAGCTGGTC AGCCGCGTCA AGGAACATCC AAAAACGGCC
TGA
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| Protein sequence | MDTHRLLMKL WKSLVALVMG FFIVNVALMV AAVGTSSVAR RWLGTWLPDG YTFNWYQTAW
QEFQLDSVLW VTIEVVAAVV FLSILIGVPA AYALARRNFR GKNLLMGLFL LPLMIPPITY
GIPLATVMYQ AHIAGTIFGV ILANMIPAVP FMILVMTPFI EQIDANLESA ARVFGANTFK
LFWHVLLPLL APGILAASLL VLVRTIGMFE LTFLTAGPDS QTLVVALYYA VFAAGVRAPQ
SVDAMAMVYM AVTLAWLLIA LQFVNPTQLV SRVKEHPKTA
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