| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5501 |
|---|
| Symbol | |
|---|
| ID | 7975358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 204204 |
|---|
| End bp | 205139 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796088 |
|---|
| Product | flavin reductase domain protein FMN-binding |
|---|
| Protein accession | YP_002947362 |
|---|
| Protein GI | 239820177 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1853] Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAG CCGCCGAAGG GATCCGCCCC GCCATCGAGC CCGCGCAGCT GCGCCAGCTG
CTCGGATGCT TTCCGACCGG CGTGGCCGTC ATCACCACCT GCACGCCGGA CGGCCAGCCG
GCGGGCCTCA CCTGCAATTC GTTCAGCTCG GTGTCGCTCG ATCCGCCGCT CGTGCTGTTC
AGCCTGCGCA ATGCCAGCCG CCTGCTGCCG ACCTTCCAGG CGGCCGAGGG CTTTGTCATC
AACATCCTCT CGCAGCAGCA GGACGCACTG TCGGGCCGCT TTGCCTCGAG CAAGATCGAG
GACAAGTTCG ACGGCGTGGC CTGGCACGCC GGCCGGCTCG GCATGCCGCT GATCGACGAC
TGCCTGGCCA GCTTCGAATG TCGCGCGCAT GCCGCCCACG AGGCCGGCGA CCACACCATC
TTCATCGGCG AGGTCCGGCA CCTGGGCGCC GGCGTGCCCG ACCAGGCGCT GGTGTTCTAC
AAGGGCGCCT ACATGATGCT GGCCGAGTCG CTGCGCAAGC TGGTCGTGGA GGGCCGCCTG
GGCGACGCCG ACATCGACGA GGCCTACCGC ACGCTCTACG GCACCCTGCT GCGCCTGGCG
AGCGAGCGCG CCACCGAGGC CGAGCTGGAC GCGGTGCACC AAGCCGCCGA CGCCATCGAG
GCGCACCCCG ACGACGCACC GCTGAAGGAG CGCATCGCCT CCGCGAGCGC TTTCTTCTCG
TCGATCGCGG CCGCCGGCCA CAACGAGGCG CTGACGCTGA TGGCGCAGAC CATGACCAGC
GTGCTGCGCG AACGCATGAC GCATGTGCTC TCGGTGCGTC CGCGCCCGGA TCTCTTTCCG
CTGCGCCGCA AGGTCGCGCA CAACCTGCGC CGGCGCGACC CCGAAGGCGC CGCCGCCGCG
CTGGACGAAC TGATCACGCA GCTGCGCAAG GGCTGA
|
|---|
| Protein sequence | MSEAAEGIRP AIEPAQLRQL LGCFPTGVAV ITTCTPDGQP AGLTCNSFSS VSLDPPLVLF
SLRNASRLLP TFQAAEGFVI NILSQQQDAL SGRFASSKIE DKFDGVAWHA GRLGMPLIDD
CLASFECRAH AAHEAGDHTI FIGEVRHLGA GVPDQALVFY KGAYMMLAES LRKLVVEGRL
GDADIDEAYR TLYGTLLRLA SERATEAELD AVHQAADAIE AHPDDAPLKE RIASASAFFS
SIAAAGHNEA LTLMAQTMTS VLRERMTHVL SVRPRPDLFP LRRKVAHNLR RRDPEGAAAA
LDELITQLRK G
|
|---|
| |