| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5496 |
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| Symbol | |
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| ID | 7975353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 198250 |
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| End bp | 199008 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796083 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947357 |
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| Protein GI | 239820172 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.599678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATGT CTTTGTCAGG CCGCACGGCC TTCATCAGCG GCGCGGGCCA CGGCATCGGC
CGCGCCACCG CCCGCGCCAT GGCGCGCCTG GGCGCGACCG TCGGCATCAA CGACCTGAAG
CCGGAGTTCG TGGAGGAGGC CGTGGCCGAG ATCCGCGCGC TCGGCGGCCA GGCCATCGGG
CTGCCCTGCG ACGTGTCGAC GCGCGACGGC ATGCGCGAGG CCGTGGCGCA GTTCGCGCGC
GAGGCGGGCC GGCTGGACGT GATGGTCAAC AACGCCGCCT GGGTGCGCTA CCAGCCGCTG
GCCGAGATCA CGCCGGAGGT CATGGACCGC ATGGTGGAGA TCGGCTTCAA GTCGGTGATC
TGGGGCATCC AGGCCGCGGC CGAGGCGATG GATCCGGAGC GCGGCGGCTC CATCGTCAAC
GTGGCCTCCA TCGCGGCCTT CAAGTCGCCA ATGCGCTCGG TGGTCTACAG CGGCATCAAG
GCCGGCGTGC TGGGCATCAC GCGCGCATCG GCCGCCGACC TGGGCGCGCG CAACATCCGC
GTGAACGCGG TCGCGCCCGG CGCCGTGCCC ACCGAAGGCA CTGCCAAGCA CCGCAATGCG
GAACTCGATG CGCGGCGCAT CGGCCGCACG CCGCTCGGGC GGCTGGGCAC GGTCGAAGAT
ATTGCCGACG CCATCTGCTT CCTGGCCGGC GACGCCTCGC GCTTCTTCAA TGCGGACGTG
CTGCGGCTGG ACGGCGGTGC TTCGGAGACC TCGCTGTGA
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| Protein sequence | MNMSLSGRTA FISGAGHGIG RATARAMARL GATVGINDLK PEFVEEAVAE IRALGGQAIG
LPCDVSTRDG MREAVAQFAR EAGRLDVMVN NAAWVRYQPL AEITPEVMDR MVEIGFKSVI
WGIQAAAEAM DPERGGSIVN VASIAAFKSP MRSVVYSGIK AGVLGITRAS AADLGARNIR
VNAVAPGAVP TEGTAKHRNA ELDARRIGRT PLGRLGTVED IADAICFLAG DASRFFNADV
LRLDGGASET SL
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