| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5470 |
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| Symbol | |
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| ID | 7975164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 171197 |
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| End bp | 173086 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796057 |
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| Product | Amidohydrolase 3 |
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| Protein accession | YP_002947331 |
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| Protein GI | 239820146 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.660952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGCA CCACCGCCCC CCACCTGATC CTGCACAACG GCCGCTTCAC CACACTGGAC
CGCGCCAACC CCGTGGCCGA CGCCGTGGCC ATCAAGGACG GCCGCTTCAC CCGCGTGGGC
CGCGCGCAGG ACATCCTGCC GCTCGCGGAC GGCAGCACCC GCGTGATCGA CCTGCAAGGC
AGGCGCGTGC TGCCGGGCCT CATCGACAAC CACCTGCACA TCATCCGCGG CGGCCTCAAT
TTCAACCTCG AACTGCGCTG GGACGGCGTG CGCAGCCTGG CCGATGCCAT GGGCATGCTC
AAGCGCCAGG TCGCGATCAC GCCCGCGCCG CAGTGGGTGC GCGTGGTGGG CGGCTTCACG
GAGCACCAGT TCGCCGAAAA GCGCCTGCCG ACCATCGAGG AGCTCAACGC CGTGGCGCCC
GACACGCCGG TGTTCCTGCT GCACCTGTAC GACCGCGCGC TGCTCAACGG CGCCGCGCTG
CGCGCCGTCG GCTACACCAA GGACACGCCC GCGCCGCCCG GCGGCGAGAT CGTGCGCGAC
GCGGCCGGCA ACCCCACGGG CCTGCTGCTG GCCAAGCCCA ATGCGTCGAT CCTCTATGCG
ACCCTGGCCA AGGGCCCGAA GCTGCCCTTC GAATACCAGC TCAATTCCAC GCGCCACTTC
ATGCGCGAAC TCAACCGCCT GGGCGTGACC GGCGCCATCG ACGCGGGCGG CGGCTTCCAG
AATTTTCCCG AGGACTACCA GGTGATCCAG CAGCTGGCCG ATGCCGGCCA GCTCACCATC
CGCCTGGCCT ACAACCTGTT CACGCAGAAG CCCAAGCAGG AGAAGGAAGA CTTCCTCCAC
TGGACCGCCA CCTCGAAGTA CAAGCAGGGC GACGACTACT TCCGCCACAA CGGCGCGGGC
GAGATGCTGG TGTTCTCGGC CGCCGACTTC GAGGACTTCC GCCAGCCGCG CCCCGACATG
GCGCCCGAGA TGGAAGGCGA TCTCGAAGAG GTGGTGCGCG TGCTGGTGCA GAACAAGTGG
CCGTGGCGCC TGCATGCCAC CTACGACGAG ACCATCGACC GCGCGCTCGG CGTGTTCGAG
AAGGTGAATC GCGACACGCC GCTCGCCGGC CTGAACTGGT TCTTCGACCA TTGCGAAACC
ATTTCGGAAA AATCGATCGA CCGCATCGCC GCGCTGGGCG GCGGCATCGC GGTGCAGCAC
CGCATGGCCT ACCAGGGCGA ATACTTCGTC GAGCGCTACG GCGCCGGCGC GGCCGAGGCC
ACGCCGCCGG TCAAGCGCAT GCTCGAGAAG GGCGTGAAGG TGTCGGCCGG CACCGATGCG
ACGCGCGTTG CCTCGTACAA CCCGTGGGTG TCGCTGTCGT GGCTGGTCAC CGGCAAGACC
GTGGGCGGCA TGCAGCTCTA CCCGCAGCGC AACTGCCTGG ACCGCGAGGC CGCGCTGCGC
ATGTGGACCG AGAACGTGAC CTGGTTCTCG AACGAGGTCG GCAAGAAGGG CCGCATCGAA
GCCGGCATGC TCGCCGACCT CGTGGTGCCC GACCGCGACT TCTTCGCCTG CCCGGAATCG
GAGATTGCCG ACACCACCGC GCTCCTGACC ATGGTCGGCG GCAAGGTGGT CTATGGCGCC
GGCCCGTTCG CAGCGCACGA CGAAGGCGCG CCGCCGCCGG CCATGCCCGA CTGGTCGCCG
GTGCGCCGCT TCGGCGGCTA CGCCGGCTGG GGCGATGCCG AGGGCGCGCC GCTGCAGAAG
GCCATGCGCC ACGCGGCCAT GTCCTGCGCC TGCGCCAACG ACTGCAACGT GCACGGCCAC
CAGCATGCGA CGGCCTGGAG CAGCAAGCTG CCGATCGCCG ACCTCAAGAG CTTCTGGGGC
GCGCTCGGCT GCGCCTGCTG GGCGGTGTGA
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| Protein sequence | MAGTTAPHLI LHNGRFTTLD RANPVADAVA IKDGRFTRVG RAQDILPLAD GSTRVIDLQG
RRVLPGLIDN HLHIIRGGLN FNLELRWDGV RSLADAMGML KRQVAITPAP QWVRVVGGFT
EHQFAEKRLP TIEELNAVAP DTPVFLLHLY DRALLNGAAL RAVGYTKDTP APPGGEIVRD
AAGNPTGLLL AKPNASILYA TLAKGPKLPF EYQLNSTRHF MRELNRLGVT GAIDAGGGFQ
NFPEDYQVIQ QLADAGQLTI RLAYNLFTQK PKQEKEDFLH WTATSKYKQG DDYFRHNGAG
EMLVFSAADF EDFRQPRPDM APEMEGDLEE VVRVLVQNKW PWRLHATYDE TIDRALGVFE
KVNRDTPLAG LNWFFDHCET ISEKSIDRIA ALGGGIAVQH RMAYQGEYFV ERYGAGAAEA
TPPVKRMLEK GVKVSAGTDA TRVASYNPWV SLSWLVTGKT VGGMQLYPQR NCLDREAALR
MWTENVTWFS NEVGKKGRIE AGMLADLVVP DRDFFACPES EIADTTALLT MVGGKVVYGA
GPFAAHDEGA PPPAMPDWSP VRRFGGYAGW GDAEGAPLQK AMRHAAMSCA CANDCNVHGH
QHATAWSSKL PIADLKSFWG ALGCACWAV
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