Gene Vapar_5464 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5464 
Symbol 
ID7975158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp166654 
End bp167358 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content71% 
IMG OID644796051 
Productprotein of unknown function DUF1275 
Protein accessionYP_002947325 
Protein GI239820140 
COG category[S] Function unknown 
COG ID[COG3619] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCCT CCCTCCCCCT GCTCATGAGC CTCAACGGCG GCTTCGTGGA CACTGCCGGC 
TTCCTGGCGC TGCAGGGCCT GTTCACGGCC CATGTCACGG GCAACTTCGT GACCATCGGC 
GCGGCGCTGG TGCATGGCAC CTCGGGCGCG CTGACCAAGC TGGTGGCGCT GCCGGTGTTC 
TGCGCCGTGG TGGTGCTCGC GCGATGGCTC GGCCACGGGC TGCCCGCCCT GGGCTTGCCG 
GTGCTGCGCA CGATGCTGGT GCTCAAGACG CTGCTGCTGG CGGCGGGCGC AGCGTTTGCC 
ATCTGCTACG GCCCGTTCAA GGACAGCGAC AGCGGCCTCG CGATGCTCAC CGGCATGTCG 
CTGGTGTCGG CCATGGCGAT CCAGAACGCC GTGCACCGGC TGCATCTGGG CAGCGCTCCG 
CCGACCACGC TCATGACCGG CACGACCACG CAGGTGATGA TCGACATCGC CGACCTGCTG 
CGCGGCCTGG CGCCGGAAGA AGTCGCCGTG GCGCGCGCCC GGCTGCGGCG CATGGCCGCC 
AGCGTCGCGG TGTTCGCCAC GGGCTGCGCC GCCGCCGCGC TCATCTACAG CCAGCTGAAT 
GTCTGGTGCT TCGTGGTTCC GCCGGTGCTG GCGGCCTGCG CCGTGCTGCT CCAGCGCGCC 
ACGCACGAGG GCGAGGCCGC CGAAGCGCCC GGCCCCCACC ACTGA
 
Protein sequence
MKPSLPLLMS LNGGFVDTAG FLALQGLFTA HVTGNFVTIG AALVHGTSGA LTKLVALPVF 
CAVVVLARWL GHGLPALGLP VLRTMLVLKT LLLAAGAAFA ICYGPFKDSD SGLAMLTGMS 
LVSAMAIQNA VHRLHLGSAP PTTLMTGTTT QVMIDIADLL RGLAPEEVAV ARARLRRMAA 
SVAVFATGCA AAALIYSQLN VWCFVVPPVL AACAVLLQRA THEGEAAEAP GPHH