| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5335 |
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| Symbol | |
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| ID | 7975796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 35942 |
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| End bp | 37222 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795929 |
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| Product | catalytic domain of components of various dehydrogenase complexes |
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| Protein accession | YP_002947203 |
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| Protein GI | 239820018 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.126679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATG CAATCGACAT CAAGGTGCCC GACATCGGCG ACTTCAGCGA CGTGCCCGTC
ATCGAGATCT TCGTGAAGGT CGGCGACACG GTGAAGGCCG AGGATCCGAT CGTCTCGCTC
GAATCCGACA AGGCGACGAT GGATGTGCCC GCGCCGATCT CGGGTGTGGT GACGGCCATC
GGCATCAAGA TCGGAGACAA GGTCAGCGAA GGGTCGGTGA TTCTTTCGCT GGCGACGGGT
GATGTGCCTG TCGCGGCGGC CGCTCCCTCA CCCCAACCCT CTCCCGCGGG CGGGAGAGGG
AGCGAAGCGG CGGCGGTGCT GCCTGCCGGC AACGCGGAAG TCGAAGCCGG CTTCGCGCTT
GCCTATGCCG GGCCGGCCGT GCGCAAGCTG GCACGCGAAC TCGGCGTCGA CCTGGGCAAG
ATCAAGGGCA CCGGCGACCA TGGCCGCATC GTGCGCGCCG ACGTCGAGGG CTTCGCGAAG
GGTGGCGGTA CGTCTGCCGC ACCGGCTGCG TCCAAGGCCG CACCCGCAGG CGGTGGTGTC
GGCGGCATCG ACCTGCTGCC CTGGCCCAAG GTCGACTTCG CCAAGTTCGG CCCGACCGAA
CGCAAGGAGC TCTCGCGCAT CAAGAAGATC AGCGCCGCCA ACCTGCACCG CAACTGGGTC
GTCATTCCGC ATGTGACGAC GCACGACGAG GCCGACATCA CCGAGCTCGA ACCCTTCCGC
GTGCAGATGA ACAAGGAGCT GGAAAAGTCG GGCGTGAAGA TCAGCATGCT GCCCTTCATG
ATGAAGGCGG CCGTGGCCGC GCTGAAGAAG TTCCCGGATT TCAACGCGAG CCTCGACGGC
GACGCCCTGG TGCTCAAGAA CTATTGGCAC ATCGGCTTCG CGGCCGACAC GCCCAACGGG
CTCATGGTGC CGGTGATCCG CGACGTTGAC AAAAAGACCG TGCCCGAGAT CGCCAAGGAG
ATGGGCGAGC TCGCCAAGCT CGCGCGCGAC GGCAAGCTCA AGCCCGACCA GATGTCGGGC
GGCACCTTCA CCATCAGCTC GCTCGGCGGC ATTGGCGGCA TCTACTTCAC GCCGATCATC
AACGCGCCCG AGGTCGCCAT CATGGGCGTG TGCAAGAGCT ACTGGAAGCA GCACTCTTCG
GACGGCAAGA CCTGGACCTC GCGCCTCACG CTGCCGCTGT CCCTGTCGTG GGACCACCGC
GTGATCGACG GCGCCGCCGC CGCGCGCTTC AACGTCTATT TCGCCAACGT GCTCGCCGAC
CTGCGGCGCG TGCTGTTCTG A
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| Protein sequence | MSNAIDIKVP DIGDFSDVPV IEIFVKVGDT VKAEDPIVSL ESDKATMDVP APISGVVTAI
GIKIGDKVSE GSVILSLATG DVPVAAAAPS PQPSPAGGRG SEAAAVLPAG NAEVEAGFAL
AYAGPAVRKL ARELGVDLGK IKGTGDHGRI VRADVEGFAK GGGTSAAPAA SKAAPAGGGV
GGIDLLPWPK VDFAKFGPTE RKELSRIKKI SAANLHRNWV VIPHVTTHDE ADITELEPFR
VQMNKELEKS GVKISMLPFM MKAAVAALKK FPDFNASLDG DALVLKNYWH IGFAADTPNG
LMVPVIRDVD KKTVPEIAKE MGELAKLARD GKLKPDQMSG GTFTISSLGG IGGIYFTPII
NAPEVAIMGV CKSYWKQHSS DGKTWTSRLT LPLSLSWDHR VIDGAAAARF NVYFANVLAD
LRRVLF
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