| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5332 |
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| Symbol | |
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| ID | 7975793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 30642 |
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| End bp | 31922 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795926 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002947200 |
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| Protein GI | 239820015 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.456248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCT TCGTCTTCAT AGGCTCGCTG CTGGGGCTCA TGGCGCTGGG GATGCCGATC
GCGTTCGCAT TGATCGGCTG CGGGTTGGCC ATGATGTACT ACACGGGATT CACCGATCCG
CAGATCGTGA TCCAGAACAT GTGGGACGGC GCGAACAGCT TCCCATTGCT CGCAGTGCCC
TTCTTCATGC TGGCCGGGGA GTTCATGAAC GCAGGCGGCA TGACGCGGCG CATCGTGGTC
ATGGCGATGT CGTGGGTCGG CCACCTTCGG GGCGGGCTGG GCTATGTCGC TGTGGCGGCG
GCGATCATCA TGGCGTCGCT GTCGGGTTCG GCGGTGGCCG ATACGGCAGC CCTGGCCGCG
GTGCTGGTGC CACTCATGCG CAACGCCGGC TACGACGTCA ACCGCTCCTG CGGCCTGATC
GCCTGCGGCG GCATCATCGC GCCGGTCATA CCGCCTTCGA TCGCGATGAT CCTTTTTGGC
GTTACCGGCG GCGTGTCGAT CACCAAGCTC TTCATCGCCG GGATCGTGCC CGGCGTGATG
ATGGGGCTGG CCATCATGCT GGCCTGGCGC TGGTCGATCC AGCGCGACAA GGTGAAGGTT
GAGCCCAGGC GCTCGATGAC CGAGCGCGGG ACCGCCACGC GCGATGCGCT CTGGGCGCTG
GTGCTGCCGA TCGTGATCGT CGGCGGGCTC AAGATCGGCC TCTTCACGCC CACCGAAGCA
GCCGTGATCG CTGCGGTCTA TTCGCTGTTC GTCGGCCTCG TGGTCTACCG CGAGATCAAG
CCGGCCCAAC TGTTTCGGCT CTTCTATCGC GCCGCCGAAA CCACGGCGAT CATCATGTTC
CTGGTGTCGG CGGCCGGTGT CTCGGCCTGG CTCATCACCA CGGCCAACAT TCCGCAGCAG
CTCGCCGATC TCGTCGAGCC CCTGATGGGC AACAAGATGC TGCTGACCTT CGTGCTGATG
CTGCTTGTTC TGGTGGTGGG GACGGCGCTG GACTTCACGC CCACGGTGCT CATCATGACG
CCGGTATTGA TGCCGGTCCT GAAGCAGGCG GGCATCGACC CGGTGTACTT CGGCGTGCTG
TTCATCATGA ACAACGCCAT CGGCCTGGTC ACGCCGCCCG TGGGTACCGT GCTCAACGTC
GTCTGCGGGG TTGCCAAGAT CCCGATGAGC GGCGCGATCC GCGGGGTCAT GCCCTTCATG
GTCGCGCAGA CCCTCGTCAT GTTCCTGCTG GTCGTCTTTC CCCAGATCGT GATGTGGCCG
CTGAAGATGA TGACCCGCTG A
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| Protein sequence | MTIFVFIGSL LGLMALGMPI AFALIGCGLA MMYYTGFTDP QIVIQNMWDG ANSFPLLAVP
FFMLAGEFMN AGGMTRRIVV MAMSWVGHLR GGLGYVAVAA AIIMASLSGS AVADTAALAA
VLVPLMRNAG YDVNRSCGLI ACGGIIAPVI PPSIAMILFG VTGGVSITKL FIAGIVPGVM
MGLAIMLAWR WSIQRDKVKV EPRRSMTERG TATRDALWAL VLPIVIVGGL KIGLFTPTEA
AVIAAVYSLF VGLVVYREIK PAQLFRLFYR AAETTAIIMF LVSAAGVSAW LITTANIPQQ
LADLVEPLMG NKMLLTFVLM LLVLVVGTAL DFTPTVLIMT PVLMPVLKQA GIDPVYFGVL
FIMNNAIGLV TPPVGTVLNV VCGVAKIPMS GAIRGVMPFM VAQTLVMFLL VVFPQIVMWP
LKMMTR
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