| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5331 |
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| Symbol | |
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| ID | 7975792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 30064 |
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| End bp | 30645 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795925 |
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| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
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| Protein accession | YP_002947199 |
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| Protein GI | 239820014 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.991967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAC CCCTCAAGGC GATCGCCGAC GCGCTCACGC GCTGTCTCGA GATCGTGATG
GTCCTGTGCA TGGTCGTGAT GCTCGCGATG GTGTTCGGCA ATGTCCTGCT CAGACTCTTC
TTCAACAGCG GCATCGATCT TTCGGAAGAG ATCCCGCGCT ACGCGTTCGT CTGGATGACC
TTCCTTGGTG CCATCGTGGG CATGAGGCGC CGTGCGCACC TGGGTGTGGA CATGCTGGTG
CAGGCGCTGC CCGCGCTCGG ACGGCGAATC TGCTGGGGCA TCAGCCAGGC GGTGATGCTG
GTGTGCTGCG GCTATATCGT CTACGGCACC TGGCTGCAGC ACGACATCAT TGCGGGAACT
TCCTCGCCCG TTGCGCAGAT CAGCACGTTG TGGGTGTTCG GCGTGAGCTA CCTGACCGGC
GGGGCCATCG GCCTGATCTG CCTGTCAAAC CTGGTGCGAC TCCTGGCCGG CAAGGTCGAG
GAAAGCGAGC TGATCGACGT CCATGAGGAG GGCATGAGCG AGGCGATCGA AGCCGAGCGC
GAGATGGTCG AGCAGCAGGC GCGTTCGGGA GCCAGACCAT GA
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| Protein sequence | MAKPLKAIAD ALTRCLEIVM VLCMVVMLAM VFGNVLLRLF FNSGIDLSEE IPRYAFVWMT
FLGAIVGMRR RAHLGVDMLV QALPALGRRI CWGISQAVML VCCGYIVYGT WLQHDIIAGT
SSPVAQISTL WVFGVSYLTG GAIGLICLSN LVRLLAGKVE ESELIDVHEE GMSEAIEAER
EMVEQQARSG ARP
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