| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5308 |
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| Symbol | |
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| ID | 7975595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 4453 |
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| End bp | 5406 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795902 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947176 |
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| Protein GI | 239819991 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.459598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCA ACTCCATCGA CCTGAATCTT TTCCTGGTGT TCCAGGCCAT CTACGCCACG
CGCAGCGTCA CGCTCGCGGG CGACCGCCTC GGCATGACGC AGTCCGCGGT GAGCAATGCC
CTCAAGCGCA TGCGCGAACG CTTCAACGAC GCGCTGTTCG TGCGCTCGGC CGACGGAATG
GTGCCCACGC CGGTCGCCGA GCGGCTCATC GCGCCCATCG AGGAAGGCAT TGCCTGCCTG
GTGCAGGCGG TCGACCAGGG CCGCACCTTC GAACCCGAGA CCTCGAGCCG CATATTCCGG
ATCGCCGTCA ACGACATCGG GCAACTGGTC ATGGTGCCGG AGCTGATTTC GGTCGCGCGC
GGCATCGCGC CGGGGGTTCG CTTCGAAACC GTGGATGTCT CCGTGGCCGA GGCCCGCCAG
CGCATGCTCC ATGGGCAGAT CGACGTCGCT CTGGGCAGCT GGGAAGCGAT GGGGCCATCG
TTCTACCAGC AGCGGCTGTT CGACGAGACC TTCGTCGTGC TGATGTCGAA GGCGTCGCCG
CTGGGCACGC GCGAGCGCAT CGAACTCGAC GACTACCTTG CAGCCGAGCA CATCGCCTAC
CGGCCGCAGG GCACCACCGA CTCGCAGCTT CAGCAAACCC TGGAGAGGGC CGGCGCGCTC
GACCGGCGGA GGGTCGTGCT TACCGCCGCC CATTCGCTCG GCCTGACCTC GATCGTCGCC
ACGTCGGGGC TCTTGCTGAC CGCGCCGGCA CGCCTTGCCA AGGCCATGGT GGCGTCGCGC
GCGGACCTGC ACAGCGTCGA CGCGCCCTTC GAGGTCAGGC CCTTCGAGAT CCGCCAGCAG
TGGCACGAGC GCTTTCACCA GGACAGCGGC AACCGCTGGC TGCGCGAGCT GATCTTCGGG
CTCTTCCATG AGCGGTCGAG CCGGGAGCCT GCGCCGCAGG CGCGAGCCAC CTGA
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| Protein sequence | MNINSIDLNL FLVFQAIYAT RSVTLAGDRL GMTQSAVSNA LKRMRERFND ALFVRSADGM
VPTPVAERLI APIEEGIACL VQAVDQGRTF EPETSSRIFR IAVNDIGQLV MVPELISVAR
GIAPGVRFET VDVSVAEARQ RMLHGQIDVA LGSWEAMGPS FYQQRLFDET FVVLMSKASP
LGTRERIELD DYLAAEHIAY RPQGTTDSQL QQTLERAGAL DRRRVVLTAA HSLGLTSIVA
TSGLLLTAPA RLAKAMVASR ADLHSVDAPF EVRPFEIRQQ WHERFHQDSG NRWLRELIFG
LFHERSSREP APQARAT
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