| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5299 |
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| Symbol | |
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| ID | 7972732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5623469 |
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| End bp | 5625166 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795893 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_002947167 |
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| Protein GI | 239818257 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.477817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATA TCCGCCGCAC GATCCTGTGG GTGATTTTTG GTTTCTCGCT GGTGCTGCTG
TGGGACCAAT GGCAGGTCTT CAACGGCAAC AAGCCGACCT TCCTGCCCTC GAGCAAGCCG
GCCGCCGTGG CCTCCGCTCC GGCGGGCGCC GCCGCACCCG CTGCCGGCAA CGGCGTGCCC
AGCGCGTCCG CCGCCACGGG CAGCGCGGGC GCCGTGCCCA CGCAGGCCGC CGCGGCCGCG
CCGCGCGAGC AGGTCAACGT GACCACCGAC CTGTTCAAGG CGGTGATCGA CAGCGAAGGC
GCCACGGTCA ACTACCTCGA ACTGCTCAAG TACGACGAGG CCGACCGCAC CAAGCACGTC
GTGCTGTTCG AGAACGCCTC GCCGGCCACC CGCTACGTGG CGCAGACCGG CCTGCTGAAC
CCGGTCGATT CGGGCGAGCG CTTCCCCAAC CACCTGACGC CGATGGCGCC CAAGGCCGGT
CCGCGCGAAA TGGCCGAAGG CCAGAACACG CTGGAAGTGA GCTTCGAAAG CGCGCCGGTC
GGCGGCCTGA AGTACGTCAA GACCTACGTC TTCAAGCGCG GCGACTACGC CATCGGCGTG
CGCCATGAAG TCGTCAACGT GAGCGACCAG CCTCGCGATG CGCAGCTCTA CATGCAGCTG
CTGCGCCACG GCACCGTGGC CGCCGGCACC ATGTTCGGCA CCAACACCTT CACCGGCCCG
GCCGCCTACA CCAACGAGAA GAAGTTCCAC AAGCTCGACT TCAAGGACAT TGCCAAGGGC
AAGATCGAGC CGCCGCCGCC CGCCAACGAC GGCTGGATCG CGATGGTGCA GCATTACTTC
GCGTCGGCCT GGCTGCTCAA GGGCGACCCG GCCAGCGAAC AGCTGCGCCG CGAGTTCCGC
GTGAAGGACC TGGGCGACAA CCTCTACACC GTCGCCATGG TGGCGACGCT GCCGAAGATC
GCTCCGGGCG CCACGCAGGT CGTGAACAGC GCGCTGTTCG CCGGCCCCGA GGAAGAAAAG
AAGCTCGAAG CCATCGCACC CGGGCTGGAC CTGGTCAAGG ACTACGGCAT CTTCGCGATC
ATCTCCAAGC CGCTGTACTG GCTGCTCACG CAGCTGCACG GCATCCTGGG CAACTGGGGC
TGGGCCATCG TGGCGCTGGT GGTGCTGCTG AAGGCGGCCT TCTACTGGCT CAATGCCAAG
GCCTACGCAA GCATGGCCAA GATGAAGGCC ATCAACCCCA AGATCATGGA AATGCGCGAG
CGGCTGAAGG ACAAGCCGCA GGAAATGCAG CAGGAAATGA TGCGGATCTA CAAGACCGAG
AAGGTCAATC CGATGGGCGG CTGCTTCCCG ATTGTGATCC AGATCCCGGT GTTCATCGCG
CTCTACTGGG TGCTGCTGTC GTCGGTCGAA ATGCGCCACG CGCCGTGGAT CGGCTGGATC
ACCGACCTGT CGGCACCGGA CCCCTGGTAC ATCCTGCCGG TCGTGATGAC GCTCACCTCG
CTGTTCCAGA CCTGGCTCAA CCCGACGCCG CCCGATCCGA TGCAGGCCAA GCTGATGTGG
ATCATGCCGC TCGCGTTCAG CGTGATGTTC ATCTTCTTCC CGGCCGGCCT GGTGCTGTAC
TGGATCACCA ACAACGTGCT GTCGATCGCG CAGCAGTGGT TCATCAACAA GCGGCTGGGC
GTGCTGGGGA CCAAGTAG
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| Protein sequence | MNDIRRTILW VIFGFSLVLL WDQWQVFNGN KPTFLPSSKP AAVASAPAGA AAPAAGNGVP
SASAATGSAG AVPTQAAAAA PREQVNVTTD LFKAVIDSEG ATVNYLELLK YDEADRTKHV
VLFENASPAT RYVAQTGLLN PVDSGERFPN HLTPMAPKAG PREMAEGQNT LEVSFESAPV
GGLKYVKTYV FKRGDYAIGV RHEVVNVSDQ PRDAQLYMQL LRHGTVAAGT MFGTNTFTGP
AAYTNEKKFH KLDFKDIAKG KIEPPPPAND GWIAMVQHYF ASAWLLKGDP ASEQLRREFR
VKDLGDNLYT VAMVATLPKI APGATQVVNS ALFAGPEEEK KLEAIAPGLD LVKDYGIFAI
ISKPLYWLLT QLHGILGNWG WAIVALVVLL KAAFYWLNAK AYASMAKMKA INPKIMEMRE
RLKDKPQEMQ QEMMRIYKTE KVNPMGGCFP IVIQIPVFIA LYWVLLSSVE MRHAPWIGWI
TDLSAPDPWY ILPVVMTLTS LFQTWLNPTP PDPMQAKLMW IMPLAFSVMF IFFPAGLVLY
WITNNVLSIA QQWFINKRLG VLGTK
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