| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5293 |
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| Symbol | |
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| ID | 7972726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5616723 |
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| End bp | 5617271 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795887 |
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| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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| Protein accession | YP_002947161 |
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| Protein GI | 239818251 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGATCG ACTTCCAGGC CGAGACCTTG CTCGCCGCGC AGGACGTGCG CGTCGCGTTC
TTCGACATCG ACGGCGTGCT GACCGACGGC GGCGTGTATT TCACCGAGCA TGGCGAAACC
CTCAAGCGCT TCAGCATCCT GGACGGCTAC GGCCTCAAGC TGCTGCGCCT GGCGGGCATC
ACGCCGGCGG TGATTACCGG GCGCGACTCC AAGCCGCTGC GCGTGCGGCT CGAAGCGCTG
GGCATCCAGC ACGTGCGCTA CGGCACCGAA GACAAGCTGC CCGCGGCCCA GGCCATGCTC
GAGGAGCTCG GTTTCAGCTG GCTGCAGGCC GCGGCCATCG GCGACGACTG GCCCGACCTG
CCCGTGCTGG CGCGCGCCGG CTTTGCGGCC GCGCCCGCCA ATGCGCATGC CGAAGTGCGC
CAGGCGGTCA ACTACGTCAC GCGCGCACGC GGCGGAGAAG GCGCGGCGCG CGAGTTCTGC
GATCTGCTGC TGACGGCCTG CGGCCAGTAC CGCCGCCTGC TCGACGCCGC CCGGGGTCCG
AGGCAATGA
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| Protein sequence | MPIDFQAETL LAAQDVRVAF FDIDGVLTDG GVYFTEHGET LKRFSILDGY GLKLLRLAGI
TPAVITGRDS KPLRVRLEAL GIQHVRYGTE DKLPAAQAML EELGFSWLQA AAIGDDWPDL
PVLARAGFAA APANAHAEVR QAVNYVTRAR GGEGAAREFC DLLLTACGQY RRLLDAARGP
RQ
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