| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5284 |
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| Symbol | |
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| ID | 7972717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5609606 |
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| End bp | 5610121 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795878 |
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| Product | protein of unknown function DUF583 |
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| Protein accession | YP_002947152 |
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| Protein GI | 239818242 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1664] Integral membrane protein CcmA involved in cell shape determination |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCACAC AGTCCCCCTT TTTCGGCAAG CGTGATCGTG ATACCGACTC GTTGACCTCT
CGCCCCGCGC CGTTGGTGGG CTCGGGCACC AATCTCTCGG GCTCGCCCGT CAATCCTTCG
TCGCTGACCG CGCAGCAAGG GGGCCTCTCC GCAGCGGCCG CACCGGCCAA GGAAGGCGGC
AGCAAGCTCA CCGTCGGCCC CAACATCAAG CTCAAGGGCG TCGAGATCAC CGATTGCGAC
ACGCTCGTGG TCGAAGGCCT GGTCGAGGCG ACCATGGACT CGCGCCTGAT GCAGATCGCC
GAACAGGGCG AGTTCAAGGG CTCGGCCGAG ATCGACATCG CCGAGATCCG CGGCGTGTTC
GACGGCAACC TCACGGTGCG CGAAAAGCTC GTGATCCACT CGACCGGCAA GGTCACCGGC
AAGATCCGCT ACGGCAAGAT CGTGATCGAG GAAGGCGGCC AGCTGTCGGG CGAAATCAGC
TTCGGCGCCA AGCCGTCGCT GCAAGCCGCA GCCTGA
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| Protein sequence | MATQSPFFGK RDRDTDSLTS RPAPLVGSGT NLSGSPVNPS SLTAQQGGLS AAAAPAKEGG
SKLTVGPNIK LKGVEITDCD TLVVEGLVEA TMDSRLMQIA EQGEFKGSAE IDIAEIRGVF
DGNLTVREKL VIHSTGKVTG KIRYGKIVIE EGGQLSGEIS FGAKPSLQAA A
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