| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5265 |
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| Symbol | |
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| ID | 7972698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5585870 |
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| End bp | 5587501 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795859 |
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| Product | amine oxidase |
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| Protein accession | YP_002947133 |
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| Protein GI | 239818223 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1232] Protoporphyrinogen oxidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCGGC GCGATTTCCT CGGCGTGGCC GGTGCGGCGG GTGCCCTTGC GCTCTCCGGC
TGCGAGGCCC CGCCGCCGCC CATCGAAGGC GGCTTCACCG GCATCGACGT GGCGCGCGGC
CATGCGCTGC GCGATGGCGC GCTCAAGGGC CCGTCTCCCG CAAGCGTCAA GCGCACGCGC
GTGGTGATCG CCGGTGGCGG TGTCGCAGGC CTCGCCGCCG CGCGCGCACT GCGGCTCGCG
GGCGTCGAGG ACTTCGTGCT GCTCGAGCTC GAGGACGCGG CGGGCGGCAA CGCGCGCGGC
GGCATGGTGA GCGGCATTGC CTGTCCGCTC GGCGCGCACT ACCTGCCGAC GCCGGGCGAC
GATGCGCGCG AAGTGCAGGA CCTGCTCGAG GAACTCGGCC TGCGCCGGCG CGTGGCGGGC
CGCTGGGAAT ACGACGAGCG CCACCTCTGC CACAGCCCGC AGGAGCGGCT GTTCTTCCGC
GGCGAATGGC AGGAAGGCCT GCTGCCCGTG CATGGCGTGG GCGCCGAGAC GCATGCGCAG
TACCGCAAGT TCGCGCAGCG CATCGACACG CTGCAGCACG CGGCGCACTT CGTCATTCCC
ACGCTCAAGG CTGCTCTCAC GCCCGAGCTG CTGGCGCTCG ATGCGCTCAG CTTTGCGCAC
TGGCTCGACA GCGAGGGCTT CGGCGATGCG CAGCTGCGCT GGTACCTCGA CTACTGCTGC
CGCGACGACT ACGGCGCGGG CATCGAAGAA GTCTCGGCCT GGGCCGGCAT CCACTACTTT
GCGAGCCGGC ACGGCTTTCA CGCGCCGGGC TCGTCGGGCA GCAGCGCCGA TTCGAACGCC
GAGCGCGACG GCGTGCTGAC CTGGCCAGAG GGCAACGGCT GGCTCACGAA GCGGCTGGCC
GGGCCGCTCG GCGATCGCCT GCGCACGGGC CAGGCTGTCA CGCGCATTGC CGAGCTGCGC
GGCGGCGTCG AGGTCGACGC ATGGGACGCC GCGTCCAAAT CATTGGTGCG CTGGCAGGCC
GAGCGCTGCA TCGTCGCGCT GCCGGTGTTC ATCGCCGCGC GCGTGGTCGA GAACGCGCCG
CAGGTGTTGA GGAACGCCGC CGCGCAGCTG CGCTATGCCC CCTGGCTCGT GGCCAACGTG
CACCTGCGCG GGCCGCTCGC CGACCGCCCC GGCGCCGCGC CGAGCTGGGA CAACGTGATC
CACGGCACGC GCGGCCTCGG CTATGTCGAC GCGCGCCATC AGACGCTCGA CCCCACGCCG
CGCGGCACCG TGCTGAGCTG GTACCGCCCG CTCGGCCCGA GCCGCCATGA CGGCGCCGAC
GGCCGCCGCC TGCTGCTCGA GCGGCCCTGG ACCGGCTGGC GCGACGACCT GCTCGCCGAA
CTCTCGGTGC CGCATCCCGA TCTGCCTGCG CTCGCGACGC GCATCGAGAT CACGCGCTAC
GGCCACGCCA TGTCGATCCC GCGGCCGGGG CTGCTCGCGC AGATCGGCGC GCAGCGCATG
CCGCCGGACG CGGCGCACCG TGGCCGCGTC GTCGCGGGAC GGCTTTCGTT CGCGCATGCC
GACTGGTCGG GCTACTCGAT CTTCGAGGAG GCGTTCACGC GCGGGCACGT CGCGGGCGCG
GCGCTGGGCT GA
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| Protein sequence | MQRRDFLGVA GAAGALALSG CEAPPPPIEG GFTGIDVARG HALRDGALKG PSPASVKRTR
VVIAGGGVAG LAAARALRLA GVEDFVLLEL EDAAGGNARG GMVSGIACPL GAHYLPTPGD
DAREVQDLLE ELGLRRRVAG RWEYDERHLC HSPQERLFFR GEWQEGLLPV HGVGAETHAQ
YRKFAQRIDT LQHAAHFVIP TLKAALTPEL LALDALSFAH WLDSEGFGDA QLRWYLDYCC
RDDYGAGIEE VSAWAGIHYF ASRHGFHAPG SSGSSADSNA ERDGVLTWPE GNGWLTKRLA
GPLGDRLRTG QAVTRIAELR GGVEVDAWDA ASKSLVRWQA ERCIVALPVF IAARVVENAP
QVLRNAAAQL RYAPWLVANV HLRGPLADRP GAAPSWDNVI HGTRGLGYVD ARHQTLDPTP
RGTVLSWYRP LGPSRHDGAD GRRLLLERPW TGWRDDLLAE LSVPHPDLPA LATRIEITRY
GHAMSIPRPG LLAQIGAQRM PPDAAHRGRV VAGRLSFAHA DWSGYSIFEE AFTRGHVAGA
ALG
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