| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5243 |
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| Symbol | |
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| ID | 7969902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5564490 |
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| End bp | 5565341 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795837 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002947111 |
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| Protein GI | 239818201 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.517304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCA CCACTCCCTT CCAGCGCCTG CGCCGTGCCC TCGCCCTGGC GCTCGCCGCC
TCCCTGTCGC TCGGCAGCCT TGCCGCCGGC GCGCAGACCA ACACGCTGCA GAAGATCAAG
CAGAGCGGCG AGCTGCGCAT CGGCGTCGCG CCCGGCGATC CGTGGTACTT CCGCGATCCC
GCCTCGGGCA CCTGGACCGG GCTCGGCGTG CTGCTCGGCG AACAGGTCGC CAAGGAGATG
GGCGTGAAGA TGACGCCGGT CGAAACCACC TGGGGCAACA GCGTGGCCGC GCTGCAGGCC
GGGCAGATCG ATGCCATGTT CGTGCTCGAC GCCACCGAGG AGCGCAAGAA GGCGATCGAC
TTTCCGGCCA GCCCGCTGCT CTGGTATGCG CAGGGCGTGC TCGCGAAGGA CGGCCTTGTT
GCGAAGAACT GGGCCGACCT CGACAAGCCC GAAGTGCGCA TCGGCGTGGC GCTCGGCACG
GCCACCGACC GCGACCTGAC CACCCGCCTG CCGAAGGCGA AGATCGAGCG CTTCACCAAC
ACCGACGAGA CCGTGGCGGC CTTCATGTCG GGCCGCGTCG ACGCGATCGG CTTCTACCAC
CCGGCGCTGG TCATCGCGTA TTCGAAGATC CGCAAGGGCA AGGTGCAGGT GCCGCAACCG
GTCGTCGCGC TGCCGACCAG CGTGGGCATC CGGCGCGAGG CCGATGCGGG CTTTCGCAAC
CAGCTCGACG GTTTGATCGG CAAGCTCTAC GCCTCGGGCC AGACGCAGGC GCTGTACGGC
CAGTACCTCA AGACCAAGGG CATCGACCCG GCCACCGTGC CCGGCGTGAT GAAGGAAACG
CTCGGCCAGT AG
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| Protein sequence | MNATTPFQRL RRALALALAA SLSLGSLAAG AQTNTLQKIK QSGELRIGVA PGDPWYFRDP
ASGTWTGLGV LLGEQVAKEM GVKMTPVETT WGNSVAALQA GQIDAMFVLD ATEERKKAID
FPASPLLWYA QGVLAKDGLV AKNWADLDKP EVRIGVALGT ATDRDLTTRL PKAKIERFTN
TDETVAAFMS GRVDAIGFYH PALVIAYSKI RKGKVQVPQP VVALPTSVGI RREADAGFRN
QLDGLIGKLY ASGQTQALYG QYLKTKGIDP ATVPGVMKET LGQ
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