| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5241 |
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| Symbol | |
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| ID | 7969900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5563105 |
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| End bp | 5563773 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795835 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002947109 |
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| Protein GI | 239818199 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTTCA CCTGGGACTT CTCGGCCGTG CTGCAGCACT GGCCCGTGCT GCTCAAGGGC
GTGGGCGTCA CGGCCGGCCT GTGGGCCGTC GCCTTTCCCT CGGCCATGGC GATCGGCCTC
TTGATCGCGC TGGGCGCGCG GTCGAAAAGC CGCCTCGTGG GCGCCGCGAC GCGCGGCTAC
ATGGAGCTGT TCCGCAACAT CCCCATCCTG ATCCAGCTGG TGTGGTTCTT CTACGCGTTT
CCGATCCTCA CGGGCTGGCA GCTCACGCCC TATGTGGCGG CGCTGCTGGC GCTTTCGCTC
AACGCATCGG CCTACTGCTC GGAGATCTTC CGCGGCGGCA TCGCCTCGCT GCCGGCGGGC
CAGTGGGAGG GTGCGCGCGC CCTGGGCATG CGGCGCGTGC AGGTGCTGCG CCGCGTGGTG
CTGCCGCAGG TGCTCAAGCG CATGCTGCCG GCCTTCACCA ACCGCGGCAT CGAGCTGGCG
AAGAACACGT CCATCGCGTC CGTCATCGCG GTGCACGAGC TCATGTACCA GGGCCGCGCG
CTGAGCGCCG CCTACTACCG GCCGCTGGAA ATCCTGACGG CCGTGGCCGT GGTGTACTTC
GTGCTCATCT ACCCTGGCGC CTATGCCGCA AGCCGCCTCG AAAAGCGCCT GGCCCTGCGC
AGCCATTGA
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| Protein sequence | MDFTWDFSAV LQHWPVLLKG VGVTAGLWAV AFPSAMAIGL LIALGARSKS RLVGAATRGY
MELFRNIPIL IQLVWFFYAF PILTGWQLTP YVAALLALSL NASAYCSEIF RGGIASLPAG
QWEGARALGM RRVQVLRRVV LPQVLKRMLP AFTNRGIELA KNTSIASVIA VHELMYQGRA
LSAAYYRPLE ILTAVAVVYF VLIYPGAYAA SRLEKRLALR SH
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