Gene Vapar_5055 details

Gene Information

• Locus tag: Vapar_5055
• Symbol: rplF
• ID: 7974174
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 5372182
• End bp: 5372715
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644795649
• Product: 50S ribosomal protein L6
• Protein accession: YP_002946923
• Protein GI: 239818013
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0037225
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGAG TAGGAAAAAT GCCGATCACC ATCCCCGCAG GCGTGGATGT GTCGATCAAG 
GAAGACCAGA TCAGCGTCAA GGGCACGGGC GGCACGCTCA ACCTTGCACG CAACCCCCTG 
GTCAAGGTCG TCAGCAACGA CGGCAAGCTG AATTTCGAGC CCGCCAACGA GTCGCGTGAA 
GCGAACGCGA TGAGCGGCAC GATCCGCCAG CTGGTGAACA ACATGGTGGT TGGCGTGACC 
AAGGGCTTCG AAAAGAAGCT CAACCTGGTC GGCGTCGGCT ACAAGGCTGC AGCGTCCAAC 
AACAAGTTGA ACCTGCAAGT CGGCTATTCG CACCCGGTCA ACATCGACAT GCCCCAAGGC 
ATCACGGTGG CCACTGCGAC CCCGACCGAA ATCGTGATCA AGGGTGCTGA CCGTCAGCGC 
GTTGGTCAAA TCGCCGCTGA GATCCGCGCT GTTCGTCCGC CTGAGCCCTA CAAGGGCAAG 
GGCATCCGTT ATTCGGACGA GAAGATCGTG ATCAAAGAGA CCAAGAAGAA GTAA 

 

Protein sequence

MSRVGKMPIT IPAGVDVSIK EDQISVKGTG GTLNLARNPL VKVVSNDGKL NFEPANESRE 
ANAMSGTIRQ LVNNMVVGVT KGFEKKLNLV GVGYKAAASN NKLNLQVGYS HPVNIDMPQG 
ITVATATPTE IVIKGADRQR VGQIAAEIRA VRPPEPYKGK GIRYSDEKIV IKETKKK