| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5003 |
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| Symbol | |
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| ID | 7974285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5316277 |
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| End bp | 5317047 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795597 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946872 |
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| Protein GI | 239817962 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0899775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCTT CTTCCCACCT CACCCTCATC ACCGGCGCCT CGCGCGGCCT GGGCCGCGCC
ATGGCCGAGC AGCTGCTGCA GGCGGGCCAC ACGGTGCTCG GCATTTCGCG CAGGCAGGAG
CCGCAGCTTG CGCAGGTCGC GCAACAAGCC GGCGCAGAAC TCATCCAGTG GGAGCAGGAC
CTGTCCGATC CGGTGGCCGC ATCGGCGCGC CTCTCGGCCT GGCTCGAAAC GCTCGACGGC
CAGCGCTTCG ACAGCGTGAC CCTGATCAAC AACGCCGGCA CCGTCGGCAA CCCCGCACCG
CTCGCGAGCG CGGTCGGCAC CGAGCTGTCG CAGGCGCTGC GCATCGGCCT CGAAGCGCCG
ATGCTGCTGA CGGCCGCCTT CCTGGGCGCC ACGCGCGGAT GGCGCGGTGC GCGCAAGGTG
CTCAACATCT CGTCAGGCCT GGGGCGCAAT GCCATGGGCA GCCAGGCGCC GTACTGCGCG
GCCAAGGCCG GCATGGACCA CTTCTCGCGC GCCGTGGCGC TCGAGGAGGC TGCCGCAGCA
CCGAACGGCG CGCGCATCGT CTCGCTCGCG CCCGGCATCA TCGACACCGA CATGCAGGTG
CAGCTGCGCG GCGCATCGGA CGAGAAGTTT CCGGACCGCG CGCGCTTCGT GAGCATGAAG
GAGGAGGGCC GGCTCGACAG CCCGGCCGCC GCCGCGGCCA AGGTGCTCAA GTACCTGGCG
CGCGAAGACT TCGGCCGCAA CCCCGTGGCC GACGTGCGCG ACCCGGCCTG A
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| Protein sequence | MTASSHLTLI TGASRGLGRA MAEQLLQAGH TVLGISRRQE PQLAQVAQQA GAELIQWEQD
LSDPVAASAR LSAWLETLDG QRFDSVTLIN NAGTVGNPAP LASAVGTELS QALRIGLEAP
MLLTAAFLGA TRGWRGARKV LNISSGLGRN AMGSQAPYCA AKAGMDHFSR AVALEEAAAA
PNGARIVSLA PGIIDTDMQV QLRGASDEKF PDRARFVSMK EEGRLDSPAA AAAKVLKYLA
REDFGRNPVA DVRDPA
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