| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4971 |
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| Symbol | |
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| ID | 7974253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5281958 |
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| End bp | 5283682 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795566 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_002946841 |
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| Protein GI | 239817931 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.142343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACA ACGCCGCACA CGCCGCGCCA GAAGCCGCGC ACGCGCACCC GATTCCCGAC
CGCCACGGCC AGAACCTGTT CAGCACCGAC ACCGAGCTGC ACAAGCTGCT CGCGCTCTAC
CTGCCCGCCG ACCTGCTGGC CCACATGCAG CCGCACTTCG AGCGCCTGGG CGGCCTTGCG
GGCGGCCTGC TCGACGACCT GGCCGGCACC GCCGACCGCA ACCCGCCCAC GCTGAAGCAG
CGCACGCGCA CCGGCCTGGA CGAGCAGAAG GTCGTCAAGC ACCCGGCCTA CGTGGAGATG
GAACGCCTCG CGCTCAGCGA ATTCGGCCTG GCCGCGATGT CGCACCGCGA CCAGACACTG
GGCTGGAAGG GCAGGATGCC GCCGCTGGTC AAGTACGTGC TGACCTACCT CTTCGTGCAA
GCCGAGTTCG GCCTGTGCTG CCCGGTGTCG ATGACCGACT CGCTCACGCG CACGCTCAAG
AAGTTCGGGG GCCCCGAGCT GGTCGCACGC TTCCTGCCGC GGCTCACGTC GCTCGATTTC
GACGAGCTCG CGCAGGGCGC GATGTTCATG ACCGAGCAGG CCGCGGGCTC CGACATCGCG
GCCACCGCGA CGATGGCGCG GCAGGAGGCC GACGGCAGCT GGCGCCTCAG CGGCGACAAG
TGGTTCTGCT CCAACCCCGA TGCCGACTTT GCGATGGTGC TCGCACGCGC CGACAACGGC
CCGGCCGGCA TGAAGGGCGT GTCGCTGTTC CTGCTGCCGC GCCGGCTCGA GGACGGCAGC
CTCAACCACT ACCGCATCGT TCGCTTGAAG GACAAGCTGG GCACGCGCTC GATGGCCAGC
GGCGAGATCC GCCTCGAAGG CGCCGTCGCG TACCTGGTGG GCGAGGAAGG CCGCGGCTTC
GTGCAGATGG CCGACATGGT CAACAACTCG CGCCTGTCGA ACGGCGTGCG TGCCGCCGGC
CTGATGCGCC GCGCGGTGGC CGAAGCCGAG TACATCGCCG CCGAGCGCCG CGCCTTCGGC
CGCACGCTCG ACCAGATGCC GCTGATGCAG CGCCAGCTCG ACAAGCTGCG CCTGCCGGCC
GAGCAGGCGC GCACCATGGT GTGCCAGACG GCGCTGGCGC TCGCGCGCTC CGACGCCGGC
GAGCCCGACG CCTACGCGCT GCTGCGCATC CTCACGCCGC TCATCAAGTT CCGCGCCTGC
CGCGATGCGC GCAAGGTCAC GGGCGACGCG ATGGAAGTGC GCGGCGGCTG CGGCTACATC
GAGGAATGGA GCGACCCGCG GCTCGTGCGC GACGCACACC TGGGCTCGAT CTGGGAAGGC
ACGAGCAACA TCGTGGCGCT GGACGTGATC CGCGCCGTGA AGCGCGAGGG CTCGCTGCCG
GTGCTGCGCG CGCACTGCGA GCAGCTGCTG GCCGATGCGG CGCTGCCGCC GGCCTTTGCG
AAGGCGCTGC GCGATGCACT GGCGCGCGCC GCCGCGCTGG CCGAGACCGC CGCGCGCGAA
GGCGGCGACG TGCTGGCGCG CCAGGCCGCC TCGGCGCTCT ACCACTGCAC GAGCAGCATC
GCGATGGCCT GGGAGGCCGC GCGCAGCGGT TCGGCCCCGC GCCTGCGCTG GGCCCAGCTG
GTGCTGCTGC ACCGCGTGCT GCCGCGCGAC CCGCTCGCGC CCGACGCGAT GCCCGCGGAC
TGGACCAGCG CGGCCACCAC GCACACCGCC AAGGCCACGG CCTGA
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| Protein sequence | MSDNAAHAAP EAAHAHPIPD RHGQNLFSTD TELHKLLALY LPADLLAHMQ PHFERLGGLA
GGLLDDLAGT ADRNPPTLKQ RTRTGLDEQK VVKHPAYVEM ERLALSEFGL AAMSHRDQTL
GWKGRMPPLV KYVLTYLFVQ AEFGLCCPVS MTDSLTRTLK KFGGPELVAR FLPRLTSLDF
DELAQGAMFM TEQAAGSDIA ATATMARQEA DGSWRLSGDK WFCSNPDADF AMVLARADNG
PAGMKGVSLF LLPRRLEDGS LNHYRIVRLK DKLGTRSMAS GEIRLEGAVA YLVGEEGRGF
VQMADMVNNS RLSNGVRAAG LMRRAVAEAE YIAAERRAFG RTLDQMPLMQ RQLDKLRLPA
EQARTMVCQT ALALARSDAG EPDAYALLRI LTPLIKFRAC RDARKVTGDA MEVRGGCGYI
EEWSDPRLVR DAHLGSIWEG TSNIVALDVI RAVKREGSLP VLRAHCEQLL ADAALPPAFA
KALRDALARA AALAETAARE GGDVLARQAA SALYHCTSSI AMAWEAARSG SAPRLRWAQL
VLLHRVLPRD PLAPDAMPAD WTSAATTHTA KATA
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