| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4887 |
|---|
| Symbol | |
|---|
| ID | 7971581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5204961 |
|---|
| End bp | 5205812 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795482 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_002946757 |
|---|
| Protein GI | 239817847 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCCA CCTTCCTTGC CTTGTTCGCG ATCGCGCTCT GGGCCACGCT CGCCTCGCTC
GGCACCGCCC TTGCGCACCT GCCGCCCTTT CTTCTGACCG GGCTCGCGCT GATCATCGGC
AGCGTGCCGA GCTGGCCGCT GGTGCTGCGG GACCGCGCGG CCTGGCGCGT GCCGCCGCGC
ACGCTGGCGC TGGGCGTCTA CGGGCTGTTC GGCTTTCACT TCCTGCTGTT CATCGCGCTG
CGAAATGCGC CGCCGGTCGA GGCCAACCTG GTCAACTACC TGTGGCCGCT GTTCATGGTG
GTGCTCGCGC CAGTGCTGCT GCCGGGCCTG TCGCTCAGGC CGCTGCACCT GGCGGCGGCG
CTGCTGGGCT TTGCGGGCGC GGCGGTCGCG ATCCTCGGCA CGCGCGGGGG CAGCGGCGCC
GGTGCCAGCG CGATCCAAGG CTACTGGGGC TTCCTGCCGG CGCTGGGCTC GGCCTTCATC
TGGGCCAGCT ATTCGCTGTG GACCAAGCGA GTCGAAGCCT TTCCGACCTC GGCCATCGGC
CTGTTCGGGC TGGTCTCGGG CGTGCTCTCG CTGGCCTGCC ATGCGCTGCT CGAAGCGCCC
GCCACGCTGT CCGGCAAGGA CTGGCTGCTG CTCGTGCTGT GCGGCCTCGG CCCGCTCGGC
GCGGCCTTCT TCGTGTGGGA CATGGCGCTC AAGCGCGGCG ACCCGCGGCG CATCGGCATC
CTGAGCTATC TCACCCCTTT GGGCTCGACG GCGCTGCTGC TGCTCGTGAC CGGCCGCCCG
CTGACCTGGA CCATCGCGCT GGCCGCCCTG CTCATCATTT CGGCAGCCGT CATGGGCACA
CGCGCACGCT GA
|
|---|
| Protein sequence | MSPTFLALFA IALWATLASL GTALAHLPPF LLTGLALIIG SVPSWPLVLR DRAAWRVPPR
TLALGVYGLF GFHFLLFIAL RNAPPVEANL VNYLWPLFMV VLAPVLLPGL SLRPLHLAAA
LLGFAGAAVA ILGTRGGSGA GASAIQGYWG FLPALGSAFI WASYSLWTKR VEAFPTSAIG
LFGLVSGVLS LACHALLEAP ATLSGKDWLL LVLCGLGPLG AAFFVWDMAL KRGDPRRIGI
LSYLTPLGST ALLLLVTGRP LTWTIALAAL LIISAAVMGT RAR
|
|---|
| |