| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4840 |
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| Symbol | |
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| ID | 7970311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5159626 |
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| End bp | 5160018 |
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| Gene Length | 393 bp |
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| Protein Length | 130 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795435 |
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| Product | Endoribonuclease L-PSP |
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| Protein accession | YP_002946710 |
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| Protein GI | 239817800 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | [TIGR03610] pyrimidine utilization protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAGC AAGCCATCAT CCCGGCCGGA ACCACCACGC CGATCGCTCC CTTCGTGCCC
GGCACCATGG CCGACGGCAT CGTCTACGTG TCGGGCACGC TGCCCTTCGA CAAGGACAAC
AACGTGGTCC ACGTGGGCGA CGCCTCGGCG CAGACGCGCC ACGTGCTCGA GACGATCCAG
AACGTGATCG CAACAGCCGG CGGCACCATG GACGACGTGA CCTTCAACAT GATCATGATC
AAGGACTGGG CCGACTACGC CAAGGTCAAC GCGGTGTACG CCGAGTTCTT TCCGGGCACC
AAGCCCGCGC GCTACTGCAT CCAGTGCGGC CTGGTGAAGC CCGACGCGCT GGTCGAGATT
GCGTCTATCG CCCACGTCGG CAACAAGGCC TGA
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| Protein sequence | MPKQAIIPAG TTTPIAPFVP GTMADGIVYV SGTLPFDKDN NVVHVGDASA QTRHVLETIQ
NVIATAGGTM DDVTFNMIMI KDWADYAKVN AVYAEFFPGT KPARYCIQCG LVKPDALVEI
ASIAHVGNKA
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