| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4738 |
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| Symbol | |
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| ID | 7971748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5035723 |
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| End bp | 5036634 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795323 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002946609 |
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| Protein GI | 239817699 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCC AGCGCCTGCC CCTGCCCACG CGCGACGGCG TCGGCCCGAG CTGCGTCGGC
CTTCCGCAAG GCGCATGGCC CACCATCGCC GAGTTCCTGA TCGAACGCTT TCCGGCAATC
ACGCGCGAGG CCTGGCTGGC CCGCATGGAA GCCCGCGACG TGGTCGACGA GCACGGCGTG
CCCGTGACCG CGCAGCGCCG CTACCAGGCG CCATTGCGCG TGTACTACTA CCGCACGCTC
GATGCCGAGG TGCGCATTCC CTTCGACGAG CAGGTGCTGT TCCAGGACGA CGAGCTCGTG
GTGGCGGACA AGCCTCCGTT CCTGCCCGTG ACCCCCACCG GCAAGTACCT GCAGGAAAGC
CTGCTGGTGC GGCTCAAGCG CAAGCTGAAG CTCGACGACC TGGTGCCGCT GCACCGCATC
GACCGCAGCA CCGCGGGGCT GGTGCTCTTT TCAGTGCGTC CCGAAACGCG CGGCGCCTAC
CAGGCCATGT TCCCCGAGCG CCGCATCGAC AAGCACTACG AGGCCGTGGT GCCGTGGCAG
CCGGGCGTGT CGTCGGTGCC CGGCACCTAC CGCAGCCGGC TGGTCGACGA CGACCATTTC
ATGCGTGTGA AGGAAGAGGC CGGCGAGCCC AATTCGGAAA CGCGCATCGC GCTGCGGAAG
ACGGCGGGCG GGCACGCCCT GCTGGAGCTT TCGCCGGTCA CCGGCCGCAA GCACCAGCTG
CGGGTGCACT GCATGGCGCT GGGCATGCCG ATCGTCAACG ATCCGTTCTA CCCTACGCTG
CTGCCGCCCG ACAGCGACGA CTTCGACAAG CCATTGCAGC TGCTGGCCAA GTCGGTGGCG
TTCCAGGACC CGGTGAGCGG CGAGCTGCGC AGCTTCACGA GCCCGCGCAG CCTGGCGCTG
CCGCCAAGGT GA
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| Protein sequence | MTGQRLPLPT RDGVGPSCVG LPQGAWPTIA EFLIERFPAI TREAWLARME ARDVVDEHGV
PVTAQRRYQA PLRVYYYRTL DAEVRIPFDE QVLFQDDELV VADKPPFLPV TPTGKYLQES
LLVRLKRKLK LDDLVPLHRI DRSTAGLVLF SVRPETRGAY QAMFPERRID KHYEAVVPWQ
PGVSSVPGTY RSRLVDDDHF MRVKEEAGEP NSETRIALRK TAGGHALLEL SPVTGRKHQL
RVHCMALGMP IVNDPFYPTL LPPDSDDFDK PLQLLAKSVA FQDPVSGELR SFTSPRSLAL
PPR
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