| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4698 |
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| Symbol | |
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| ID | 7971708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4988241 |
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| End bp | 4989497 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795283 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002946569 |
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| Protein GI | 239817659 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCGG CAATGCCTGT CCCCCAGGCC TTCGCAGAGG CGCCGCCGGG CGAGCTCCGG
CGTGCGCTGG CGCGCGCCGA GTCGCGCCGC AAGTGGCGCG CCTTTGCGCT CACGGCGCCG
CTCCTGGTGT TTTTGCTGCT GACGCTGCTG GTGCCGATCG TGGCGCTGCT GCAGCGCGCG
GTCGAGAACC CCGAGGTTGC CAACGCGCTG CCGCGCACCG TGCGCGCGCT CGACGGCTGG
AACCGCAAGG AGGCGCCCGC GCCCGCGGCC TATGCCGCCA TCGCGGCCGA CCTCGCCCAG
CTGCCCGACA GCTCCGACGC GGGCGCCCTG GCGCGCCGCC TCAACACCGA GATCGCAGGC
GCCCGCTCGC TGGTGATGGG CACCTTCCGG GCATTGCCGA TCGCCGGCAC GCCGGACGAG
GTCAAGGCGC GCATGCTGGA GATCGATCCG CGCTGGGGCG AGCTGCCGTT CTGGCAGGCG
ATTGCCAAGA ACGGTTCGCG CTGGACGCCC GACTACCTGC TCGCCTCGGT CGACCTGCGG
CGCGACGTGG CCGGCGAGGT GGAGCGCATG CCCGCCGACC AGCGCGCCTT TGCCGGCATC
CTGCTGCGCA CCTTCAACAT CAGCGCCGTG GTCACCTTCT TCTGCCTGCT GCTGGCCTAT
CCGCTGGCTT GGTGGCTGTC GACGCTGCCG GCGCGCAAGG CCAACGTGCT GATGATCCTG
GTGCTGGTGC CGTTCTGGAC TTCCATCCTG GTGCGCGTGG CGGCCTGGAT CGTGCTGCTG
CAGTCCGAGG GGCTGGTCAA CCGCGGCCTG ATGGGCATCG GCCTGATCGA CCATCCGCTG
GCGCTGCTGT TCAACCGCAC CGGCGTGATC ATCGCGATGG TGCACATCCT GCTGCCCTTC
ATGATCCTGC CGCTCTACAG CGTGATGAAG AGCGTGCCGC CCACCTACCT GCGCGCGGCC
GTCTCGCTGG GCAGCTCGCC GCTGGCGGCG TTCTTCCGCG TGTACGTGCC GCAAACCTAC
CCGGGCATTG GCGCCGGCGC GCTGCTGGTG TTCATCCTGG CCATCGGCTA CTACGTGACG
CCGGCGCTGC TCGGCGGCGC GGACGACCAG ATGCTGAGCT ACTACATCGC GCGCTACACC
AACGTGGAAA TCAACTGGGG CATGGCCTGC GCGCTGGGCG CCGTGCTGCT CGCCGCCACG
CTGGTGCTGT ATGCGGTGTA CCGCCGCATC GGCAAGGCCG AGCTGAGCCT CGGCTGA
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| Protein sequence | MQAAMPVPQA FAEAPPGELR RALARAESRR KWRAFALTAP LLVFLLLTLL VPIVALLQRA
VENPEVANAL PRTVRALDGW NRKEAPAPAA YAAIAADLAQ LPDSSDAGAL ARRLNTEIAG
ARSLVMGTFR ALPIAGTPDE VKARMLEIDP RWGELPFWQA IAKNGSRWTP DYLLASVDLR
RDVAGEVERM PADQRAFAGI LLRTFNISAV VTFFCLLLAY PLAWWLSTLP ARKANVLMIL
VLVPFWTSIL VRVAAWIVLL QSEGLVNRGL MGIGLIDHPL ALLFNRTGVI IAMVHILLPF
MILPLYSVMK SVPPTYLRAA VSLGSSPLAA FFRVYVPQTY PGIGAGALLV FILAIGYYVT
PALLGGADDQ MLSYYIARYT NVEINWGMAC ALGAVLLAAT LVLYAVYRRI GKAELSLG
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