| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4697 |
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| Symbol | |
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| ID | 7971707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4987194 |
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| End bp | 4988222 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795282 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002946568 |
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| Protein GI | 239817658 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA CCCTTCTCGC CTGCATCGCC GCCGCCGGCT TCGCGCTGCC GGCCTTGGCC
CAGCAGCAGC TCACCGTGGT CAACTTCGGC GGTGCCAACG CCAACGCCCA GAAGAAGGCC
TATTACGAGC CCTACGAAAA GACCGGCACC AAGATCATCC CCGTCGAATA CAACGGCGAG
CAGGCCAAGA TCAAGGCCAT GGTCGAGACC AAGAAGGTCA CCTGGGACGT GGTCGAGGTC
GAGTCGCCCG ACGCCGCCCG CGGCTGCGAC GAAGGCCTGT TCGAGAAGCT CGACTACTCC
AAGATCGGCA GCAAGGCCGA CTTCCTGCCG GCCGCGGTCA CCGACTGCGG CGTCGGCCTG
TTCGTGTGGT CGACCGTGAT GGCCTACAAC GGCGAGAAGC TCAAGACCGC GCCCACCAGC
TGGGCCGATT TCTGGGACGT GAAGAAGATC CCCGGCAAGC GCGGCATGCG CAAGGGCGCG
CGCTACAACC TCGAGTTCGC GCTCATGGCC GACGGCGTGA AGCCGGCCGA TGTCTACAAG
GTGCTCGCCA CCAAGGATGG CGCCGAGCGC GCGTTCAAGA AGCTCACCGA ACTCAAGCCC
AACATCCAGT GGTGGGAAGC CGGCGCACAG CCGCCGCAGT TCCTGGTGGC CGGCGACGTG
GTGCTGACCA CCGTGTACAA CGGCCGCATC GACGCGGCCA ACCGCGAAGG CCGCGACCTC
AAGATCTACT GGCCCGGCGG CATCTACGAC CTCGACTACC TGGTGATCCC GAAGGGCGCG
CCCAACAAGG AAGCCTCGCT CAAGTACATC CAGTTCGCGA TGCAGCCGGC CAACCAGTCG
GTCTATGCCC AGAACATCGC CTACGGCCCC ACCAACACCA AGGCACTGGC CTCGCTCAGC
CCCAAGGTGC TGGCCGACCT GCCGACCTCG GCCACCAACG CCAAGGACGC GCTGCAGTTC
AACGTCGGCT TCTGGGCCGA CCAGGGCGAG GCGCTCGAGA AGCGCTTCGC ATCCTGGGCC
ACGCAGTAA
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| Protein sequence | MKKTLLACIA AAGFALPALA QQQLTVVNFG GANANAQKKA YYEPYEKTGT KIIPVEYNGE
QAKIKAMVET KKVTWDVVEV ESPDAARGCD EGLFEKLDYS KIGSKADFLP AAVTDCGVGL
FVWSTVMAYN GEKLKTAPTS WADFWDVKKI PGKRGMRKGA RYNLEFALMA DGVKPADVYK
VLATKDGAER AFKKLTELKP NIQWWEAGAQ PPQFLVAGDV VLTTVYNGRI DAANREGRDL
KIYWPGGIYD LDYLVIPKGA PNKEASLKYI QFAMQPANQS VYAQNIAYGP TNTKALASLS
PKVLADLPTS ATNAKDALQF NVGFWADQGE ALEKRFASWA TQ
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