| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4643 |
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| Symbol | |
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| ID | 7972853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4933156 |
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| End bp | 4934292 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795227 |
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| Product | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
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| Protein accession | YP_002946514 |
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| Protein GI | 239817604 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
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| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.218889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTCC CTCCTGAAGT TTGCATTCGC GGCGCCGGCA TCGTGGGCCG CACGCTGGCC
CTGCTGCTCG CACGCGAGCG AGTGCGCGTC GCGCTGGTGG TTCCGCCCGC CGCGGCCGGC
AAGCAGGACA TCCGGGCCTA TGCGCTCAAC ACCGCCTCCC GCACCCTGCT CGAATCGCTG
CGCGCCTGGC CCGACGCGGC GCATGCCACG CCGGTGCGCG AGATGCTCGT GCACGGCGAC
GAAGGCGGGC GCGTGCAGTT CAGCGCCGTG CGGCAGAAGG TCGATGCGCT GGCCTGGATC
GTCGACGTGC CGGCGCTCGA GCAGCAGCTG GCCGATGCGG TGCGCTTCCA GCCCCAGGTC
GAAGTCGTTT CCGAGCCGGT GTCCGCGCCG CTCACCGTGG TGTGCGAAGG CAAGGCCAGC
GCCACGCGCG AGGCCCTCGG CGTGAGCTAC GCGGTCACGC GCTATCCGCA GCATGCGATT
GCGGCGCGGC TCGAAGCCGC GCAGCCGCAC GACGGCGTGG CGCGCCAGTG GTTCAACGAC
ACCGGCGAGG TGCTGGCGCT GCTGCCGATG GGCGGCGTGC AGGGCCGTTC GCTGGCGCTG
GTGTGGTCGG TCGACCAGCT TCGCGCGCCC GCGCTGCTGG CGCAAGGCGA CGAGGAATTC
AACGCCGCGG TGAGCGAAGC CAGCCATGGC GCGCTCGGAC CGCTTCGGCT CACGAGCGAA
CGTGCCGCCT GGCCGCTCGC GCGCGCCATC GCCGACCGCT GGACCGGCAC CCTGCCGCAG
GCGAAGGGTG CGGCCGCGCA GTCGTGGGCA CTGGCCGGCG ACGCGGCCCA CACGGTGCAT
CCGCTCGCGG GCCAGGGCCT CAACCTCGGT CTGGCCGATG CGGCCATGCT GGCCGACGTG
ATCCGGCAGC GCGAGTACTG GCGCAGCGTG GGCGACCCGC GCCTGCTGCG CCGCTACGAG
CGCGCGCGCC GCGCCGACGT GCTGCAGATG AGCCTGGCCA CCGACGGCCT GCAGCAGCTG
TTCTCGCACA GCGTGGGCCC CCTGCCCGCG CTGCGCAACT GGGGCATGCG CGGCTTCGAC
CGCACGCGCC TCCTCAAGCA CTGGATCGCC AACCAGGCGA TGGGCTTGAA GGCATGA
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| Protein sequence | MALPPEVCIR GAGIVGRTLA LLLARERVRV ALVVPPAAAG KQDIRAYALN TASRTLLESL
RAWPDAAHAT PVREMLVHGD EGGRVQFSAV RQKVDALAWI VDVPALEQQL ADAVRFQPQV
EVVSEPVSAP LTVVCEGKAS ATREALGVSY AVTRYPQHAI AARLEAAQPH DGVARQWFND
TGEVLALLPM GGVQGRSLAL VWSVDQLRAP ALLAQGDEEF NAAVSEASHG ALGPLRLTSE
RAAWPLARAI ADRWTGTLPQ AKGAAAQSWA LAGDAAHTVH PLAGQGLNLG LADAAMLADV
IRQREYWRSV GDPRLLRRYE RARRADVLQM SLATDGLQQL FSHSVGPLPA LRNWGMRGFD
RTRLLKHWIA NQAMGLKA
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