| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4582 |
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| Symbol | |
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| ID | 7973280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4845402 |
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| End bp | 4849088 |
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| Gene Length | 3687 bp |
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| Protein Length | 1228 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644795167 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_002946454 |
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| Protein GI | 239817544 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4913] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCG CCAAACTCTT GACTTGGCAC TGGGGTTCGC TGGAGGACCG CGAGTGGATC
TTCGCCGACA CAGTGCTGTT GACCGGTGAA TCTGGCTCGG GCAAATCCAC GCTGCTGGAT
GCGATCCAAA CCGTACTGAC TGCCGCGCAC CAGCATCTGG TGCAGTTCAA CATCGGTCAA
GACGAATCGA CGCAAAGCCG ACGCGGTGGC AAGGAGCCAC GCACCCTGGC TGCCTATGCG
CTCGGGCAGC AGGCCGACGG TGTTTTCCTG CGCTCACGCT CTACCAGCTA TGCCGGGATC
GTGTTCGAAG CGTCCCGGCA CGCTGGTGAG CAGTCTCCAC CGTTTACGGC GCTGGTCGGT
GTCGAGGCTT TTGAGGATGG GCGGCGACCC GTGTTGCAAG GTTCGCCACA GTTCTTCATC
GTCCGCCATG CGTTGTCTTT GGACCATCTG GCCCGACGCA ACGGCGAGGC GCTCGCTAGA
TCTCCTTTGT CGCTCAAAGA GCTCTATGTG CAGTTGCAGC ACCGTTTGCA GGCGGGCACG
GACACCGTAG TGCAGCGTTT CCCGGACAAG GGTGGCTACT TGCAGCACCT CTACGGTGCG
CTCATGGGAA AGACCGCGGT GGGCGAGAAC GATGCCGTTC GTGCCGCCAA GTCGATCGTC
AGGGCCATGG CTTACAAGGA ACTGGGCAAC GTCAACGATC TTGTTCGCGA CGAAATCCTT
GAGCCCCATG ATTTCAGTCG CGACCTGGAA AAGATGCGCG AGTTGATGCG CTCGATCGCA
TCACTCAAGG CCGAGGCCGA CCGGCTGGCT CTGAATCTGG AGCGGTTGGG AGTGGCCACG
GAAAGCGCAC AGAGCGCGTT GGATGAATCG CGCCGCTTCG TTGTAGCAAC CATTGCTCAC
GCTTTGCGCG CGCGCAGCGA CACCCGAGAC GAACTGGCCT CGGTGCAGCG CCAGATCGCA
ACTCAGGACA AGCGCCAGGC GCAGTTGCAG GAGAAGCTGG CTTCTTTGGC GGCACAGGAG
ACGCAATTGC GCGAGCAGTT GAAGCTGGTC GAGAAGCGGT TGGAAGAAAG CGACGTGGCG
CGTGAGAAAG CTATGCTCGA CAACCAGATC CGGTTGCAAG CTGACCAGTT CCGTCTGCAC
TGGAACCGCG TCCAAGAGGC GGTACGCGGC ATCGGGGTGA TGGCAACAAA ACTCCAACAG
TTGCTCGCAC TGGATTTGGA GGCCGTGCCT TCATTAGCCG CTGCTGTGGA ACTGATGCGT
CCAGCGGGTG CTGCTGTGCT CAAGCCCTGG CCGGCCATGG CTCAGGCCTA TGCGCGTGAA
GCCCAGCTCG ATGTCGAACT ACCTGCCTTT GAACTGGAGG CTTTCGATAC CCACTTGACC
GCCTTGCAAC GAGGCATTCA TGACGGCGAA AATTCGCTAC AGGGGACCGT GGTGCTGGCG
CTAACCGATG TGGGCGTGCG GTTGAGGTCG GTCGGTGACG AGACCCAACA GCTGGACGCC
GAACTTCGCG TGCTACAGAC GGGGCGCAGC CTGGGTCTGC CGGCCGCGCG CGATGCCACT
GCAGCCGTCG TGCTGATTGA GCAAGAACTG CCGCAGGCCC ATCCGTACAT GCTGGCGCAA
CTGGTCGAGC CGCGTGCGGG CACTGGTTGG CAGAACGCCA TCGAAGGCTA CATGGGGGGT
GATCGGTTCG CGATCATCGT CGAAGCCGGA TGGGAAGCGA AATGCGCGCG TCTGGTCAAA
CAGCGCTATC CCGTGCGCTC CCCCAAGGTC GTGCAGGGGC GCAAGGCCAT GGAAGACACT
GAGGGGCGGC AACTCGAGGC CAGAGCGATG CTTCACGAGC TTCAGTGCAA GCACCCTGTC
GCCAATGCAT TCCTGATGGC ACAGTACGGG CGCGTGCGCA AGGTGGACAG CGAGGAAGAA
CTGGCCCGCA CGCCCCAAGG TCTGATGAAG CAGGGGTTGG GCAGCCGCGG ATACGGCATG
TTTGCTTGCC GGGCGCTCGA TGGCGAGCTT ACTTTCGGCG AGGCAGCCCG CCAGCGGCGC
AAGCGGTGGT GCGAGGATGA GTTGGCGCGG CTCGCGCGGG AGACTCAAAC CCTGGAGACA
CTGCGCGGAT CTTTGACAGC CATCACACGA ATGTTCAACG GTGCCGCGTT CACGCCACTG
ACACCATTGC TTTTGGCTGT GCTGGAAAGT CAGGCCCAAC ACGCCAACGC CGAACAGGCA
CTCAAAGCGT TGGACCTTTC CTCCATCGAC GAGCTGCTTG CACACCAGCG CGATCTGATA
GATCGCATCG AAACGGCAAG GACTCAGCAC AGCGAAGAAA AGGAACACGT TGGCGCCAGC
AAATCGACGT TGGGAGGTTT ACGTCGCCGC GAGTCCGAAC TGCAAACCCG CCTTCCCGAG
CTGGACGGCA CTTGTGCCAA CGCCTCCGTT TGGGCCTCGC GTTTCGTCAA CGCCGTGTCT
GAGCTGGCGA CGGAAGCGCA GTTGCTGGGG GAGGCCGAAA GCATGGCGCA GGAATCCGAA
ACCACGCTCG ACGCCTTGCG CCACCGAGCT CAATCACTGC GCGAAAACTT ACCTCGTACG
CTACGCGAGC TGGCACAGGC CGTGGGGATC TACCTCTCCG GTGCACGTGA TGACGCTGAG
CGCTTCGTAT GGACCGATCC GCCACGCACC ATCGATCGAT TGGACGAGTT GTTGCCTCTC
GTCTTTCGGA CCCGTCAGGC CATTGCGGAG CAGACTCAGC GCCAGCAAGC CATCGGCTTG
GCTGAGAACG CCAAGTCCCT GCAGGAGGCC GAAGCCAGTT TCAATCATGT CTTCACCAGC
AGCTTCTGCT TCAAGTTGCG AGACGATGTG AAGCAGGGCG CCGCTACGCT GCAGCGGCTT
AATCGCCATC TGCAGGATAT CCGCTTCGGC AACGACACCT TCAAGCTTGA ATGGGACTGG
ATCCCACGCA TGCGGAAGGT TCAAGAGTTT TTCGAGGCGG TTGAGGGCGT CGTCGAAGGG
CTGGAACGCG AGCGCGGTTC CATCTTCGCA TCGCCTCAGC TCAGCGATGA ACAGCGTGCC
ACCGCCGAAG AGATCCGCCG GCTTCTTCTG GCCAATGACC AGGGTGCAAG TGAACGTGCG
TTGAAGGAAC TGGCTGACTA CCGCAACTAT CGTCGTTACG ACATCGTGCG CACCAGTCCA
GTTGGAGAGA CCCGGCTGTC CACATGGGGC ACCGGCTCGG GCGGTGAACT TGAAACGCCC
TTCTATGTTG TCCGTTCGGC GGTGCTCGCC CATGCATTGG GCCACTTCGG TCGTGAGCGT
CGAGAGGCAC CTGCGTTGCG ACTGATGCTC AGCGATGAAG CCTTCTCCAA AATGGATGAA
TCGCGTTCGC GCAGCGTGTT GCGCTTTCTG TCGCAGACGC TGGGCCTGCA ACTTGTGGTA
GCCATGCCCA CCTCCAAATC GGGCGCAGTC AAACCCGAGT TCGACAAGGA GTTTACTTTC
TCCAAGGTTA TGGCCAGCCG CGACGGGAAG GAGCTGTTCA TCAGCGAAGT GCAGGAAAAG
ACGTTGAACC GGCAGGCATT GACACGGCTA TGGGATGCCC ACGCTGCACA GGCACGCGAG
GTCGCACGTG TTGCCTATGA AGCGGATCGC CAGAGTTCCG CTCAGGTGCA GCAAGAGTCG
ACGCCCGATC CAGAATCGAC AGGCTGA
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| Protein sequence | MKIAKLLTWH WGSLEDREWI FADTVLLTGE SGSGKSTLLD AIQTVLTAAH QHLVQFNIGQ
DESTQSRRGG KEPRTLAAYA LGQQADGVFL RSRSTSYAGI VFEASRHAGE QSPPFTALVG
VEAFEDGRRP VLQGSPQFFI VRHALSLDHL ARRNGEALAR SPLSLKELYV QLQHRLQAGT
DTVVQRFPDK GGYLQHLYGA LMGKTAVGEN DAVRAAKSIV RAMAYKELGN VNDLVRDEIL
EPHDFSRDLE KMRELMRSIA SLKAEADRLA LNLERLGVAT ESAQSALDES RRFVVATIAH
ALRARSDTRD ELASVQRQIA TQDKRQAQLQ EKLASLAAQE TQLREQLKLV EKRLEESDVA
REKAMLDNQI RLQADQFRLH WNRVQEAVRG IGVMATKLQQ LLALDLEAVP SLAAAVELMR
PAGAAVLKPW PAMAQAYARE AQLDVELPAF ELEAFDTHLT ALQRGIHDGE NSLQGTVVLA
LTDVGVRLRS VGDETQQLDA ELRVLQTGRS LGLPAARDAT AAVVLIEQEL PQAHPYMLAQ
LVEPRAGTGW QNAIEGYMGG DRFAIIVEAG WEAKCARLVK QRYPVRSPKV VQGRKAMEDT
EGRQLEARAM LHELQCKHPV ANAFLMAQYG RVRKVDSEEE LARTPQGLMK QGLGSRGYGM
FACRALDGEL TFGEAARQRR KRWCEDELAR LARETQTLET LRGSLTAITR MFNGAAFTPL
TPLLLAVLES QAQHANAEQA LKALDLSSID ELLAHQRDLI DRIETARTQH SEEKEHVGAS
KSTLGGLRRR ESELQTRLPE LDGTCANASV WASRFVNAVS ELATEAQLLG EAESMAQESE
TTLDALRHRA QSLRENLPRT LRELAQAVGI YLSGARDDAE RFVWTDPPRT IDRLDELLPL
VFRTRQAIAE QTQRQQAIGL AENAKSLQEA EASFNHVFTS SFCFKLRDDV KQGAATLQRL
NRHLQDIRFG NDTFKLEWDW IPRMRKVQEF FEAVEGVVEG LERERGSIFA SPQLSDEQRA
TAEEIRRLLL ANDQGASERA LKELADYRNY RRYDIVRTSP VGETRLSTWG TGSGGELETP
FYVVRSAVLA HALGHFGRER REAPALRLML SDEAFSKMDE SRSRSVLRFL SQTLGLQLVV
AMPTSKSGAV KPEFDKEFTF SKVMASRDGK ELFISEVQEK TLNRQALTRL WDAHAAQARE
VARVAYEADR QSSAQVQQES TPDPESTG
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