| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4567 |
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| Symbol | |
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| ID | 7973265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4818231 |
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| End bp | 4820357 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795152 |
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| Product | exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_002946439 |
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| Protein GI | 239817529 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCCA CTCTGTCTTC CCTGGCAACG GTGGACGCCC CCGTTGCCGA TCGAATGCCC
ATCTCCTCGC GACCGCTGCT GACGATGATG GCGTCGTGGC GAGAGCAGGG GTGGCTGCGG
CGGCTTGACA CCGCTTTCGC TCGTTTCCTG GTAGACCTGT CGCCGACCGC TCCGGACGCG
CTGGTCTTGG CCGCCGCCTT GGTGGTGCAT ATGGAAGGGC GTGGGCACTC TTGCCTCCGG
CTGGACGAGC TATTGCGTGA TCCCCAGGCG GTGCTGGGTT GGCCTCCCGA GCCAGCTGCG
GCCTTGCGTG TAGCGCTGGA TTCCCTGCCG GGCGATGTCG ATATCTGGAT CGCGACTTTT
CAGACCAGTC CGCTGGTCGG GTCTGATGAC GGCGCATCGA GGTCGACAAC CATTGACGCC
CATCCGCCGC TGATGCTGCG TGGGCACACG CTGTACCTGC GGCGCTACTG GGAGGATGAG
AGACGCGTGG CCGCGCAGGT CGACGCACGC AGCCGGTCCG AACTGCCGGT GGATCCCGTG
ACGGTGCGCA TGTGGTTGGA CCGATTGTTC CCCGCTGACA CCCATGCATC GCCAGATAGC
GAGGCCGCCA TCGATTGGCA GAAAGCAGCC TGCGCCGTCG CGCTGCGAAG CAAGCTGTCG
ATCCTGACCG GCGGTCCGGG CACTGGTAAG ACCTATACGG CCGCTCGCCT GCTGGCGCTG
CTATACGCAG TGGATCCAGC TCCGGAGCGG TTGCGCATCG CGTTGGCCGC GCCGACCGGC
AAGGCGGCTG CGCGGCTCAA GCAGGCGATT GAGACCTCGT TGACCGAACT GCAGGATCGC
TTGGGAGACA GCTTGTCGCT GGGGGCACTG GCCGCGCACA TTGGCGCAGC TCGGACGTTG
CATGCGTTGC TCGGGGCACG GCCGGATACC CGCGCGTTTG GCTTCGACGC GGCGCACCCG
CTAGACGTCG ACGTGGTGAT TGTGGATGAG GCGTCCATGA TCCACCTGGA GATGATGGCC
GCGCTATTGG AGGCATTGCC GACACAAGCG CGGGTGATTC TCCTGGGGGA CAAGGACCAA
CTGGCATCGG TGGAGGCGGG GGCGGTGCTG GGTGACCTGT GCCGCCATGC GGAGCATGGG
CTCTACCGGC TTTCCACCGC AGCTTATGTG GAAGCTGCCT CCGGCCAGCA CATCCCTGCA
GCATATATGG GGGACGGTCC GCCGTTGGCG CAGCAAACGG TCATGCTGCG TGCCAGCAAG
CGCTTCGGCG GGGCGATTGG CCAACTCGCG CTGGCCGCCA ATCGGGGTGA CTCGGCGGCT
GCGGAAGCTC TGCTGCGCGA CGACAGTAGT CCGGCGGTGG CCTGGCTCGA TGGTGGATCC
GCTTCGACCG CAGTGCGCCT TGCGCTGCAA GGGCGCGACG CTGCCGGAGA GGCTGGCGGT
GTTGATGATG CCGTTGGAGC ATATGGCGGC TATGGTGTTT ACTTAACAGC GTTGCAGGCA
CGACCACGCG GCGACGAGGC GCCTGCACAC GCTGGATGGA CGCTCGCGGT CTTGCGTGCG
TTTGAGCGTT TCCGGGTGCT CTGTGCGGTG CGCGAAGGTG AATGGGGGGC CATGGGCCTG
AACCAGGCGA TAGAACGGGC GCTGGTAGCG GAGGGGCGAT TGACGAAGGC CGGCGAATGG
TACGAAGGAC GCCCCGTCAT CGTCACTCGC AATGACGCGG GCCTCGGCGT ATTCAATGGT
GATATTGGCA TCACGCTGAA GCCGGCGGCC AAGGGCGCCC CCCTGCGCGC TTACTTCCTC
GACGGCGAGT CCGTACGCTC GGTGGCTGTG AGCCGGCTGG CGCACGTCGA AACGGCCTTC
GCCATGACCG TGCACAAGTC TCAGGGCTCG GAGTTCGCGC ACACAGCGCT GGTGCTGCCG
CGCGAGCCCA GCCGGGTGTT GACGCGCGAG CTGGTCTATA CCGGCATCAC GCGGGCGCGG
GATGCTTTCA CTCTCGTGAC AGGGCGTACA GCATCGCTGG CGGATGCGCT GGCGCACCCG
ACCCACCGCG CGAGCGGTTT GCTTGAGCGG CTTGCTCCCG CTGAAGGCAG CCCACCACGT
GCTCCTGAAA GGCAAAGGTC GCTTTGA
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| Protein sequence | MSATLSSLAT VDAPVADRMP ISSRPLLTMM ASWREQGWLR RLDTAFARFL VDLSPTAPDA
LVLAAALVVH MEGRGHSCLR LDELLRDPQA VLGWPPEPAA ALRVALDSLP GDVDIWIATF
QTSPLVGSDD GASRSTTIDA HPPLMLRGHT LYLRRYWEDE RRVAAQVDAR SRSELPVDPV
TVRMWLDRLF PADTHASPDS EAAIDWQKAA CAVALRSKLS ILTGGPGTGK TYTAARLLAL
LYAVDPAPER LRIALAAPTG KAAARLKQAI ETSLTELQDR LGDSLSLGAL AAHIGAARTL
HALLGARPDT RAFGFDAAHP LDVDVVIVDE ASMIHLEMMA ALLEALPTQA RVILLGDKDQ
LASVEAGAVL GDLCRHAEHG LYRLSTAAYV EAASGQHIPA AYMGDGPPLA QQTVMLRASK
RFGGAIGQLA LAANRGDSAA AEALLRDDSS PAVAWLDGGS ASTAVRLALQ GRDAAGEAGG
VDDAVGAYGG YGVYLTALQA RPRGDEAPAH AGWTLAVLRA FERFRVLCAV REGEWGAMGL
NQAIERALVA EGRLTKAGEW YEGRPVIVTR NDAGLGVFNG DIGITLKPAA KGAPLRAYFL
DGESVRSVAV SRLAHVETAF AMTVHKSQGS EFAHTALVLP REPSRVLTRE LVYTGITRAR
DAFTLVTGRT ASLADALAHP THRASGLLER LAPAEGSPPR APERQRSL
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