| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4461 |
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| Symbol | |
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| ID | 7972749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4706019 |
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| End bp | 4709192 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795050 |
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| Product | hypothetical protein |
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| Protein accession | YP_002946338 |
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| Protein GI | 239817428 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3064] Membrane protein involved in colicin uptake |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.481101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCAC CACAAGCACC GACCCATTCG ACCGAAGGAC TTGCCGCCAG TGGCGTTGCT
CCTGTGGTCA TCGCCCAAGC CACCAGCACA CCGCTCGGCG CTCCCGCCGC GATGAGCTCG
TCGGCACCTG CCGCTGCCGC GGCGCCCTCG AGCATTGGCA CATTGTCCAA TGCTACGCCG
GGCGTCGCGG TGATGCGCGA GGGTGTCCGC ATTCCGGTGG ACGGCAACCA GACCCTGATC
GCGGGTGACC GCGTGATCGT TCCCGAAGGC GGGCAGGCCA ACGTCCTGTT CCCCGGCTCG
GCCACCAACA AGGCGCCGCT GGCCGGCGTC TTCACCGGCG GCACCGACGC CACCATCGGC
TCGACCAAGC TGCCCGGCGG CCTCGAACAA GTGAATGTGG ATGTCGCCTC GGGCGACCTG
CAGGTGACCC CGCCCGACAG CGACGCCGAC GCGGCCGCAC TGGCCGTCAC CAAGAAGGTC
GCGGCCGGCA GCGGCCTGGG CCTCGGCGAA TTCGCGCTCG GCGCGCTGGG CGCCGTTGCG
CTCGGTGCCG CGCTGGGCGG CGGTGGCGGT GACGACGGTG GAACGATCCC ATTCTTCGCC
GGCAGCGGCG GTGGTGGTGG CGGTGAGAGC GATGCGGATG CTGATTCCGA TGCAGATGCT
GACGCGGATG CCGACGGCGA TGCGGACGCG GATGCCGACG CTGACGCGGA TGCCGATGCT
GATGCTGATG CTGATGCCGA TGCCGATGCC GATGCCGATG CCGATGCCGA TGCCGATGCG
GATGCGGATG CGGATGCGGA TGCGGATGCC GATGCGGATG CGGACGCTGA CGCTGACGCT
GACGCGGATG CCGACGCCGA CGCCGACGCG GATGCCGACG CCGACGCAGA CGCAGACGCA
GACGGCGACA GCCTGCTCGA TCCGGGCGAC GGCGCAGCCG GCGGCCTGGT CGGTTCGATC
GGCGACACCG CGGGTCTCGG CGACTCGCTC GACCCGGTGC TGGGCGTGGT CGACGGCGTG
AGCGACGTGG TCGACGACGT GCTGGCCCCG GTGCTCGGTT CCGAGTTCTC CCAGAACGAT
CCCAACCAGT TCGATCCGGC GGACGACTTC GTCGAGACCG TGGCCGATGG CGTGGGCGGC
GTGGCCAGCC CGATCGTCGA CGGCCTGCTC GGCGAAGGCG CCACGGGTGC GCTGGTCGAC
CAGCTGGTCA AGCAGGTCGA CTACGTCACC GACGCGCTGC AGAACGGCCT GGACAACCTG
GTGGGCGATG AAGGCATCCT GAGCGGCCTC ACCGGCAGCC TCGGCCTGGA CGGCGCGCTC
GACGGCCTCG TGGGCGAGGA TGGCGTGGTC GGCAACGTGG TGGACGGCCT GCTCGGCCAG
GACAGCCTCC TCGGCGAGCT CGTCAGCGAA GACGGCCTGG TGGGCGGCCT GCTCGGCGAG
AACGGCACGC TTGGCGGCCT GATCGGAGAA GGCAGTGCCG TCGGCAGCCT GCTGGACAAA
GTGATCGGCG ACGACGGCAT CGTCGGCGGC CTGCTGGGCG AGGACGGCGC CCTTGGCGGC
GTGGTCGGCG GCGTACTGGG CGAAGAGGGC CTGCTGGGCG GCCTGCTCGG CGCGGGCAGC
CCCGTGGGCA GCCTGCTCGG CGGCGACGGC GTGGTGGGCG GCCTGCTTGG CGGTGACGGC
GCGCTGTCCA GCCTGCTGGG CAGCGAAGGC CTCTCCGGCG GCCTGCTGGG CCAGGATGGC
GTGGTCGACA ACCTCCTGGG CGACGGCGGC GCCGTGAGCG GCCTGCTCGA AGACAGCCCG
CTGGGTGGCT TGCTCGGCGG CGAAGACGGC CTGCTCGGCG GCGTGACCGA TGGCGTGCTG
GGTGAGGGCG GCCTGCTGGG CGGCGTGCTC GGCAATGACG GCGTGGTCGG CGGCCTGCTC
GGCGAAGACG GCTTGCTCGG CAGCGGCGGC GCCATCGGCA GCCTCCTCGC AGAAGACGGC
CTGCTCGGCG GCGTGCTCGG CGAGGACGGC CTGGTCGACA ACCTGCTGGG CGACGGCGGC
CTGCTGGGCG GTGTGCTCGG CGAAGACGGC CTGGTCGGCA ACCTGCTCGG CGGTGGCCTC
CTGGGTGGCG ATCTGCTCGG CGGTGACCTG CTGGGCGGCG TGCTGGGCGA AGACGGCCTT
GTCGGCAACC TGCTCGGCGG CGATCTCCTG GGCGGTGACT TGCTCGGCGG CGACCTGCTC
GGCGGCGTGC TGGGCGAGGA CGGCCTCGTC AGCAACCTGC TCGGCGGCGA TCTCCTGGGT
GGTGACTTGC TCGGCGGCGA CCTGCTCGGC GGCGTTCTCG GTGAAGACGG CCTTGTCGGC
AATCTGCTCG GTGGCGATCT CCTGGGCGGT GACTTGCTCG GTGGTGACCT GCTGGGCGGC
GTGCTCGGCG AAGACGGCCT TGTCGGCAAT CTGCTCGGCG GTGACCTCCT GGGCGGTGAC
TTGCTCGGTG GTGACCTGCT CAGCGGTGTG CTGGGCGAGG ACGGCCTGGT CGGCAACCTG
CTTGGTGGTG ACCTCCTGGG TGGCGACTTG CTCGGCGGCG ACCTGCTCAG CGGCGTGCTC
GGCCAGGATG GTGTTGTCGG CAGCGTGCTC GGCGGCGACC TCCTGGGTGG CGATTTGCTC
GGCGGTGATC TGCTGGGCGG CGTGCTCGGC CAAGACGGCG TTGTCGGCAG CGTGCTCGGC
GGCGACCTTC TGGGTGGCGA CTTGCTCGGC GGTGATCTGC TCGGCGGCGT GCTCGGCGAA
GACGGCATCG TCGGCGGCCT GCTCGGCGGC GATCTGCTTG GCAACGACGG CCTGGTCGGC
AGCGTGCTCG GCAGCGATGG CCTGCTGGGC GGCGTGCTGG GCGGCGGCAG CAGCCCGGTG
GCCAACATCC TGGAGCCGGT GCTCGAGACG GCAAGCACGG CCGGTGCGGC GCTCGAACCG
GTGGTTGCCA CGGCATCCAC GGTGGCAGCG CCCGTGACCG ACATCCTGGC CGGCGCAGCC
CCGACGGTCG CTCCGGTGGT CGACACCGTC GCCAGCGTGG TCGACACGGT GGAGCATGCC
GCGCCGATCG TGACCGACGT GGTCACCCCG ATCACCAGCC TGGTGGACCA GGCCGCCGGC
ACCGGCAGCG TTCTCACCCC GGTGGCGAAC ATCCTGCACG GCCTGCTGGG TTAA
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| Protein sequence | MNAPQAPTHS TEGLAASGVA PVVIAQATST PLGAPAAMSS SAPAAAAAPS SIGTLSNATP
GVAVMREGVR IPVDGNQTLI AGDRVIVPEG GQANVLFPGS ATNKAPLAGV FTGGTDATIG
STKLPGGLEQ VNVDVASGDL QVTPPDSDAD AAALAVTKKV AAGSGLGLGE FALGALGAVA
LGAALGGGGG DDGGTIPFFA GSGGGGGGES DADADSDADA DADADGDADA DADADADADA
DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA
DGDSLLDPGD GAAGGLVGSI GDTAGLGDSL DPVLGVVDGV SDVVDDVLAP VLGSEFSQND
PNQFDPADDF VETVADGVGG VASPIVDGLL GEGATGALVD QLVKQVDYVT DALQNGLDNL
VGDEGILSGL TGSLGLDGAL DGLVGEDGVV GNVVDGLLGQ DSLLGELVSE DGLVGGLLGE
NGTLGGLIGE GSAVGSLLDK VIGDDGIVGG LLGEDGALGG VVGGVLGEEG LLGGLLGAGS
PVGSLLGGDG VVGGLLGGDG ALSSLLGSEG LSGGLLGQDG VVDNLLGDGG AVSGLLEDSP
LGGLLGGEDG LLGGVTDGVL GEGGLLGGVL GNDGVVGGLL GEDGLLGSGG AIGSLLAEDG
LLGGVLGEDG LVDNLLGDGG LLGGVLGEDG LVGNLLGGGL LGGDLLGGDL LGGVLGEDGL
VGNLLGGDLL GGDLLGGDLL GGVLGEDGLV SNLLGGDLLG GDLLGGDLLG GVLGEDGLVG
NLLGGDLLGG DLLGGDLLGG VLGEDGLVGN LLGGDLLGGD LLGGDLLSGV LGEDGLVGNL
LGGDLLGGDL LGGDLLSGVL GQDGVVGSVL GGDLLGGDLL GGDLLGGVLG QDGVVGSVLG
GDLLGGDLLG GDLLGGVLGE DGIVGGLLGG DLLGNDGLVG SVLGSDGLLG GVLGGGSSPV
ANILEPVLET ASTAGAALEP VVATASTVAA PVTDILAGAA PTVAPVVDTV ASVVDTVEHA
APIVTDVVTP ITSLVDQAAG TGSVLTPVAN ILHGLLG
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