| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4424 |
|---|
| Symbol | |
|---|
| ID | 7974098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4665559 |
|---|
| End bp | 4666506 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644795013 |
|---|
| Product | Ornithine cyclodeaminase |
|---|
| Protein accession | YP_002946301 |
|---|
| Protein GI | 239817391 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATT TCGACCAACC CGCCACCCGC GAGCCGCTGG ACTTTGCGCG GCTCGTGCCT
GCGCTGCGCG CAGCCTTCGC GGCCGAGGCC CAGGTGCCGC CGCGCCATGT GCACGCCATC
GAGACCGCCG GCGCCGACAA GGGCACCGTG CTCATCATGC CGGCGTGGAG CGACGCGGGC
TTTCTGGGCA TCAAGACCAT CAACATCTTT CCGGGCAACA GCGCGCGCGG CCTGCCCGGG
CTGCATGCGA CCTATGTGCT GTACGACGCG CGCACCGGCG TGCCGCTGGC CATGATGGAC
GGCAACGAGC TCACCGCGCG CCGCACGGCC GCGGCGTCGG CGCTGGGCGC CTCGTTCCTG
GCGCGCACCG ATGCACGCCG CCTGCTGGTG CTGGGCACCG GCCGCGTCGC GCGGCTGCTG
CCCGCCGCGC ATGCGAGCGT GCGGCCCATC GACGAGGTGC GCGTGTGGAA CCACCGGCCC
GAAGGCGCCC AGGCCCTGGC CGCGCAATGG CGTGCCGAAG GGTTCAACGC CCAGGCCGCC
ACCGGGCTCG AAGCGGCCGT GGGCCAGGCC GACATCGTGA GCTGCGCCAC GCTGGCCACC
GCGCCGCTGG TGCGCGGCGA ATGGCTGGCG CCCGGCTCGC ACCTGGACCT GATCGGCAGC
TTCACGCCCG CCATGCGCGA GGCCGACGTG CGCTGCTTCG AGGGTGCGCG CACCTTCGTC
GACACCACCG AGGCGCTGCA GAAGGCCGGC GAGCTGCTCG ACGCGATCGC GGCCGGCACG
CTGCGCGCCG ATGAGGTGCA AGGCACGCTG GCCGCACTCT GCCGGGGCGA ATGCGCGGGC
CGCGCGGGCC GCGAAGAGCG CACCGTCTTC AAGGCCGTGG GCAGCGCGCT CGAAGACCTG
GCGGCCGCCA CGCTGGTCTG GCAGCACGCC GAATCGATTC CGGCCTAA
|
|---|
| Protein sequence | MKHFDQPATR EPLDFARLVP ALRAAFAAEA QVPPRHVHAI ETAGADKGTV LIMPAWSDAG
FLGIKTINIF PGNSARGLPG LHATYVLYDA RTGVPLAMMD GNELTARRTA AASALGASFL
ARTDARRLLV LGTGRVARLL PAAHASVRPI DEVRVWNHRP EGAQALAAQW RAEGFNAQAA
TGLEAAVGQA DIVSCATLAT APLVRGEWLA PGSHLDLIGS FTPAMREADV RCFEGARTFV
DTTEALQKAG ELLDAIAAGT LRADEVQGTL AALCRGECAG RAGREERTVF KAVGSALEDL
AAATLVWQHA ESIPA
|
|---|
| |