| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4406 |
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| Symbol | |
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| ID | 7974080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4648702 |
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| End bp | 4650471 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794995 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_002946283 |
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| Protein GI | 239817373 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.277319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTACC GCCCCCGCCC CGAAGACAGC CGCTTCATCC TGAACGCGGT GCTCGACGCA
CCTTCGAAGC TGCGCGCCCT CGCGCCCTTC GCCGAGGTCG ACGAAGCGCT GCAGCAGCAG
GTGCTCGAGG AAGCGGCGCG CTTCGTGGCC GAGGCGGTGG CGCCCATCAA CCGCGGCGGC
GACGAGACCG GCTGCCGCTT CGCCAACGGC GAGGTCGCCA CGCCACCCGG CTTCCGCGCG
GCCTACCAGG CCTTCGTCGA TGGCGGCTGG CCCAGCTTGT CGGCCGCGCC TGAAGACGGC
GGCCAGGGGC TGCCGACCGT GCTCGAGGCC ATCCTCTACG AATGGCTGAG CGCGGCGAAC
CATGGCCTCA CGATGGCACC GGGCCTGCTG CACGGCGCCT ATGCCTGCCT CAAGCACCAC
GGCAGCGACG AACTGAAGGC GCTCTACCTC TCGAAGATCG CCACCGGCGA ATGGCTCGCC
ACCATGTGCC TGACCGAAGC CCATGCGGGC AGCGACCTGG GCCAGGTGCG CACGCGCGCC
ACGGCGCAGG CCGACGGCAG CCTGCGCGTG AACGGCGGCA AGATCTTCAT CTCGGGCGGC
GAGCACGACC TCACGCCCAA CATCGTGCAC CTGGTGCTGT GCCGCATGCA TGGATCGGAA
GTACAGGCGC CCGCCGGCCC CAAGGGCCTG TCGCTGGTGC TCGTGCCCAA GCTGCTGCCG
GACGGCACGC GCAATGCGGT GCACTGCGAG CGCATCGAGG AGAAGATGGG CCTGCATGGC
AGCCCCACCT GCACGATGCG CTTCGACGAC GCCACGGGCT GGCTGGTCGG CGAGCCGGGC
CGCGGCCTGG CCGCGATGTT CGTGATGATG AATGCGGCGC GCCTGCATGT GGCGCTGCAG
GGCATCGGCC TGCTCGACGC CGCCTGGCAG AAGGCCGACG CCTATGCGGC CGAGCGCCGC
CAGATGCGCG CGCCCGGCAC CGTGCCCGCC AGCCGCGGCA GCGAGGCCGC GGACCTGATC
GCCGAGCATC CCGCGATCCG CCGCATCCTC GACACCCAGC GCGCCTGGAT CGACGGCGCG
CGCACGCTCG CCTACCGCAG CGCGCTGATG CTCGACGTGG CCGCGCACGA TGCCGATGCC
AAGGCGCGCG AACGCGCGCA GCGCTGGTGC TCGCTGGTCA CGCCCGTGCT CAAGGCCGCG
TGCACGCAGC AGGCCTTCCA TGGCGCGAGC GAATGCCTGC AGGTGTTCGG CGGCCACGGC
TACGTGCGCG AATGGGGCAT CGAGCAGATC GTGCGCGACG CGCGCGTGAC CATGATCTAC
GAGGGCACCA ACGAGATCCA GGCCATCGAC CTGCTGGTGC GCAAGGTGCT GCCCGACGGC
GGCGCCGGCA TGTCGGCCGT GCTGCTCGAA CTGCGCGACG CGCTCGACGC CTCGCGCGAC
GCCGATGCCG ACGTGCAGCG CCGGCTCGCG CAGCTGCGCT ACCTGGGCAC CACCATCGCG
ATGGCCGCGC AGGCCAACCC CGTGCTGCCC TACGAAGTGG CCGACGCCTA CCTGCGCGCG
GTGATGCTCG CGATGCTGGC CTGGGCCTGG GCGCGCATCG ATGCGGCCGA GGCGCCAGAG
GCCGAGCGCG TGGCCCGGGC CGGCCCGGCG GCGGCGCTGC GGCGCTGGGT GCTGCCCGAA
TTCGACATGC GGCTGGCCAT CGTCAAGCGC GCCTGCGAAG GTGTCGCCAT GACGCACCAC
GCCGCAAAAA CCCCGGCCGC CGCGCGCTGA
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| Protein sequence | MDYRPRPEDS RFILNAVLDA PSKLRALAPF AEVDEALQQQ VLEEAARFVA EAVAPINRGG
DETGCRFANG EVATPPGFRA AYQAFVDGGW PSLSAAPEDG GQGLPTVLEA ILYEWLSAAN
HGLTMAPGLL HGAYACLKHH GSDELKALYL SKIATGEWLA TMCLTEAHAG SDLGQVRTRA
TAQADGSLRV NGGKIFISGG EHDLTPNIVH LVLCRMHGSE VQAPAGPKGL SLVLVPKLLP
DGTRNAVHCE RIEEKMGLHG SPTCTMRFDD ATGWLVGEPG RGLAAMFVMM NAARLHVALQ
GIGLLDAAWQ KADAYAAERR QMRAPGTVPA SRGSEAADLI AEHPAIRRIL DTQRAWIDGA
RTLAYRSALM LDVAAHDADA KARERAQRWC SLVTPVLKAA CTQQAFHGAS ECLQVFGGHG
YVREWGIEQI VRDARVTMIY EGTNEIQAID LLVRKVLPDG GAGMSAVLLE LRDALDASRD
ADADVQRRLA QLRYLGTTIA MAAQANPVLP YEVADAYLRA VMLAMLAWAW ARIDAAEAPE
AERVARAGPA AALRRWVLPE FDMRLAIVKR ACEGVAMTHH AAKTPAAAR
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