| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4296 |
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| Symbol | |
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| ID | 7970483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4539936 |
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| End bp | 4540805 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644794882 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002946174 |
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| Protein GI | 239817264 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCTCG CGCTTCTTAG CAGCATTCTG ATCGACGGGG TCGCGTACGC GATGATCCTG
TTCATGATCA CAGTGGGCCT GTCGATGACG ATGGGCCTGA TGCGGGTGGT GAATCTGGCC
CATGGCGCCT TCGCGATGCT CGGTGGCTTC CTCGCAGCCA CGATCCCGCA GCGCCTGGGC
GTGCCGATCT GGCTGGGCTT CGTGCTGGCC ATCGTTCTGG TCGGACTGGT TGCGCTGCTG
TTCGAGCGCA TCCTGCTTCG GCGCTTCTAT CGACGCGACG ATCTCGATCA GATGCTGATG
ACGATCGGGC TGATGTTCGT AGCAACAGCC GCGGTGAATC TACTGTTCGG ATCCACTGTG
ACATCGGTGG CGCTGCCGGA GCTGTTCAAC GGCACGGTCG ATCTGGGCTT TCGGTCCATC
CCTCGGCATC GGCTCATCGT TATGGCGTGT GGGCTCGTTG TCGTCTGCGT TCTTTGGCTG
GCGGTGGACA AATCGTCCTT CGGCATCCGG GTACGCGCTG CAGTCGACAA CGCGCCCATC
GCACGGGCCA TCGGCATCGA CACGACGAAG ATCTATGCCG CCACTTTTGT GATGGGTGCA
GCGCTCGCGG CTCTGGGGGG CATCGCTGGC GCGGAACTGC TTCCCATGGA GTCGACCTAC
GCCTCCAAAT ACCTGGTGAT CCTCCTGGCC GTCGTCGCCG TGGGAGGCAA CGGAAATCTG
TTTGGCTCAT TCTTTGCAGC GTTGCTGCTC GGCATTGTGG AGACTTCGAT GAAATACATG
GTTCCGCAGC TCGCATCGGC TGCGTTTTTC CTGACGATGA TCATCGTCCT GCTGGTTCGA
CCGCAAGGCT TGTTCGGGAG ACACGCATGA
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| Protein sequence | MSLALLSSIL IDGVAYAMIL FMITVGLSMT MGLMRVVNLA HGAFAMLGGF LAATIPQRLG
VPIWLGFVLA IVLVGLVALL FERILLRRFY RRDDLDQMLM TIGLMFVATA AVNLLFGSTV
TSVALPELFN GTVDLGFRSI PRHRLIVMAC GLVVVCVLWL AVDKSSFGIR VRAAVDNAPI
ARAIGIDTTK IYAATFVMGA ALAALGGIAG AELLPMESTY ASKYLVILLA VVAVGGNGNL
FGSFFAALLL GIVETSMKYM VPQLASAAFF LTMIIVLLVR PQGLFGRHA
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