| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4180 |
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| Symbol | |
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| ID | 7971917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4419976 |
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| End bp | 4420770 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794766 |
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| Product | flagellar biosynthetic protein FliR |
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| Protein accession | YP_002946059 |
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| Protein GI | 239817149 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCCA TCTTCTCCGT CACCTCGGCG GAGCTGACCG CCTGGCTGAC GGCCTTCCTG
TGGCCCTTCG TGCGCATGCT GGCGCTGGTG AGCACCGCGC CGGTGTTCGG CGAGCCCGGC
GTCGCGCGCC AGATCAAGGT GGCCATTGCC GCGCTGCTGG CGGTGGCCAT CGCGCCCACG
CTCGGGCCGA TGCCCGCGGT GCCGGTGGTC TCCGCGGGTG GCGTGTGGAT CATCGTGCAG
CAGGTGCTCA TCGGCGGCGC CATCGGCTTC ACCATGCGCA TGGTGTTTGC CGCCGTGCTG
GCGGCGGGCG AGTACATCGG CCTGCAGATG GGCCTGTCGT TCGCGTCCTT CTTCGACCCC
ATGGCCGGCG GCGCCACCAT GGTGGTCGCG CGGCTCATGC ACATGCTGGC CATTCTTCTT
TTCCTGGCGG TGGACGGCCA CCTGCTGATG CTGGCCGCGC TGGCGGAGAG CTTCCACACG
CTGCCCATCG CCGATGCACC GCTGGCGGCG CAGGGCTGGA TGCTGCTGGT GTCCGGCGGC
GGCCGCATCT TCGCCAACGG GTTGATGCTG GCGCTGCCGC TGGTGACCGC GCTGCTCACG
CTCAACCTTG CAATGGGCAT CCTGAACCGG GCATCGCCGC AGTTCAGCAT CTTTGCGGTG
GGCTTTCCGC TCACGCTGCT GGCGGGCATC GGCATGCTGC AGCTGCTGAT GCCGCAGCTC
GGCGCCTTCC TGGAGCCGCG CTTTGCCGCC GCGCTGTCTT CGCTGCCGCA GCTGATGCAG
GCGCTGCGGC CCTGA
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| Protein sequence | MPAIFSVTSA ELTAWLTAFL WPFVRMLALV STAPVFGEPG VARQIKVAIA ALLAVAIAPT
LGPMPAVPVV SAGGVWIIVQ QVLIGGAIGF TMRMVFAAVL AAGEYIGLQM GLSFASFFDP
MAGGATMVVA RLMHMLAILL FLAVDGHLLM LAALAESFHT LPIADAPLAA QGWMLLVSGG
GRIFANGLML ALPLVTALLT LNLAMGILNR ASPQFSIFAV GFPLTLLAGI GMLQLLMPQL
GAFLEPRFAA ALSSLPQLMQ ALRP
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