| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4139 |
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| Symbol | |
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| ID | 7971876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4380220 |
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| End bp | 4382667 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794725 |
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| Product | MscS Mechanosensitive ion channel |
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| Protein accession | YP_002946018 |
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| Protein GI | 239817108 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGCAG CCATGCGTTC GATCCCCCGC CTGATTGCCT TTTGCCTGGC CGCCCTGCTG
CTGCTGATGT GCGGCGCCGC AACGGCCCAG CCGGGCACCG GCGGCGTCGG CGGCAGCACC
GCGGCTGCCG CGGCCCCGGC GCCCGAACCC ACGGTGGCCG AGCTGCGCGA GCAGTTCAAC
AAGATCAGCA CCGATGCCGA TTCCACCGGG GACCTGCGCC AACTGCTCGC GCAGATCAGC
GACATCGGCA CGCAGGCCGA CAAGTTCGTT GCCGCGCGCA CCGGCGAGCT GGCCGACCTG
AACGCCCGCC TCGGCGAACT CGGCAATCCG CCGGCCGCGG GCGCGACCGA AGACCCCGAC
ATCACGCGCC AGCGCGCCCG CCTCACGAAG GAGCGCAACG CGCTGGACGC CGACATCCGG
CTCGCACGGC TGCTGGCCAT CGACGTGCGG CAGCGCGCGG CCGAACTGGT GACCCAGCGC
CGCGCGCTGT TCGAGGCGCA GATCACCGAG CGCGCGCCCT CGCCGCTCAC CGGCGAGTTC
TGGGGCGATC TGCAGGACGC CTGGCCGAGC GACCTGGCGC GCCTGAAGGC CATGGCCTCC
GACCTGCGCG ACGGGTTCTC GCAGGCCATG CAGCAAGGCC CCCGCATGGC GGTGCTCTGG
GCGCTGATCC TGGCAGTGCT GCTCGCGGTG CTCGGCAACT GGGTGGCCGA GCACCTGCTG
ACGCGGATCG CCGCGCGGCT GCTGCCGGCC GGCCGGCTGC GGCGTTCGCT GCTGGTGATT
GCCATCGTCG CGAGCCACGT GCTGCTGGTG GCCGTGGCCG CGCACGGCTT CGTGTGGGTG
CTCGAGGAAT ACGCCACCTG GGAGCCGCAG GCGCGCAAGG CGATGCGCTC GACGGCGCAG
GCGCTGGTGT TCATGGCCTT CGTCATCGGG CTGGGCCGCG GGCTGCTGGC CACGCGCCGC
CCGTCGTGGC GGCTGCCGCC GATTCCGGAC GCCATGGCCA CCCGCCTGGC GCCGCTGCCG
TGGCTGGTTG CGGCGGTGGC GGCGCTGGCC TGGGCGCCGG TGGAGATCAA CGCGCTGGTG
GAAGCGAGCT TTGCGGCCGT GGTGGCCACG CACGTGCTCA CGGCGCTGGT GCTCACGGCG
CTGGTTGGCG CGGTGCTCCG TCGCCTGAGG CCCATGCGCG CCGATACGCC GGACGCCGAT
CCGCCCGAGC GGCCGATGTG GGTGGGCCTG CTGGTGGCCT GCATCGGCGT GCTGATGGTG
GCCATCTGGG TGCTGGTGGC GGTGGGCTAC GTGGCGCTCG CGAGCTTCCT GGCCTCGCAG
CTCACCTGGA GCGGCATCGT CGCGGCCGCC TTCTACGTGC TGTTCAAGTT TGCCGACGAC
GTGTTCATGG CCGGCGTGTC GTCGCGCAGC ACTTTCGGCC AGCGCCTGCA GAAGAGCTTC
GGCCTGGCGC CGCAGACGCT CGACCAGGCG GCCACCGTGC TCTCGGGCCT GAGCCGGGTG
GCGCTGTTCT TCTACATGCT GATCGCGCTC GCGGCACCGC TGGGCACCGG GCCCAGCGAA
GTGTTCCAGC GCAGCGGCAA ATTCGGCACC GGCGTGAAGG TGGGCGAGTT CCAGCTGGTG
CCGGGCGCCA TCCTGAGCGC CGTGGCGGTG GCGGTGATCG GCTTCATCGT GCTCAGGGTG
TTCAAGCGCT GGCTCGCGCG CAGCTACCTG CCCAGCACGC AGTTCGAGCC GGGCATGCAG
AGCTCGATCA CCACGCTGCT GGGCTACGTG GGCGGCATCC TGGTGGTCGC GTTCTCGCTG
TCGGCGCTGG GCATCGGCAT CGAGCGCATC GCGTGGGTGG CCAGCGCGCT GTCGGTGGGC
ATCGGCTTCG GCCTGCAGGC CATCGTGCAG AACTTCATCT CGGGCCTCAT CCTCCTGGCC
GAGCAGCCGG TGAAGGTGGG CGACTGGGTG GTGCTGGGCA CCACCGAAGG CGACGTGCGG
CGCATCAACG TGCGGGCCAC GGAGATCCAG CTGGGCGACC GCTCGACGGT GATCGTGCCG
AACTCCGAGT TCATCACGAA GACCGTGCGC AACATGACGC TGACCAACGC GGAGGGCCGG
GTGCTGATCC GCCTGCCGAT GCCGCTGACC ACCCACGCCC AGCGCGTGCG CGAGCTCATT
CTGGACGCCT GCCGCGCACA CGAGAGCGTG CTGGAAACAC CGGCGCCTTC GCTCACGCTC
GAAGGCATCG AGGGCGGCCT GCTGATCTTC CAGGCCATTG CCTATGTGCC GAGCCCGCGG
CTGGCAGGCA GCGTGCGCAG CGACCTGCTG TTCACCATCC TGGAGCGGCT GGATGCGGAG
CAGCTGCCGC TGGTGCCGTA TGCGGCGCCG CCTGCGCCCG TGCCTGCGTC CGCACCCGCG
CCGGATGCCG CGGACGGCGC CGGCCCGGCC GCCACCCCCG CCGCCTAG
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| Protein sequence | MMAAMRSIPR LIAFCLAALL LLMCGAATAQ PGTGGVGGST AAAAAPAPEP TVAELREQFN
KISTDADSTG DLRQLLAQIS DIGTQADKFV AARTGELADL NARLGELGNP PAAGATEDPD
ITRQRARLTK ERNALDADIR LARLLAIDVR QRAAELVTQR RALFEAQITE RAPSPLTGEF
WGDLQDAWPS DLARLKAMAS DLRDGFSQAM QQGPRMAVLW ALILAVLLAV LGNWVAEHLL
TRIAARLLPA GRLRRSLLVI AIVASHVLLV AVAAHGFVWV LEEYATWEPQ ARKAMRSTAQ
ALVFMAFVIG LGRGLLATRR PSWRLPPIPD AMATRLAPLP WLVAAVAALA WAPVEINALV
EASFAAVVAT HVLTALVLTA LVGAVLRRLR PMRADTPDAD PPERPMWVGL LVACIGVLMV
AIWVLVAVGY VALASFLASQ LTWSGIVAAA FYVLFKFADD VFMAGVSSRS TFGQRLQKSF
GLAPQTLDQA ATVLSGLSRV ALFFYMLIAL AAPLGTGPSE VFQRSGKFGT GVKVGEFQLV
PGAILSAVAV AVIGFIVLRV FKRWLARSYL PSTQFEPGMQ SSITTLLGYV GGILVVAFSL
SALGIGIERI AWVASALSVG IGFGLQAIVQ NFISGLILLA EQPVKVGDWV VLGTTEGDVR
RINVRATEIQ LGDRSTVIVP NSEFITKTVR NMTLTNAEGR VLIRLPMPLT THAQRVRELI
LDACRAHESV LETPAPSLTL EGIEGGLLIF QAIAYVPSPR LAGSVRSDLL FTILERLDAE
QLPLVPYAAP PAPVPASAPA PDAADGAGPA ATPAA
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