Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4136 |
Symbol | |
ID | 7971873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4377394 |
End bp | 4378245 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644794722 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002946015 |
Protein GI | 239817105 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGAGA AACGCGGCAC CCACGGCATC CTGGCCCATG TGGTGATGAT CCTGGGCGTG TTCATCGTCG CCTTCCCGCT CTACCTCGCG TTCGTGGCGT CCACCCACAC GGCGCAGGAG ATCGTGCAGG CGCCGATGCC GCTGCTGCCC GGCACCAACA TGCTGGACAG CTACAAGGGC GCGCTCTTCG GGCGCGAAAC CAGCAGCGGC TCCAACGCGC CCGTGGCCCA CATGATGTGG GTGAGCCTGG TGACGGCGCT GGTGATCTCC ATCGGCAAGA TCTCCATCTC GCTGCTGTCG GCCTTTGCCA TCGTCTACTT CCGGTTCCCG TTCAAGAAGA TCTGCTTCTG GGCCATCTTC GTGACGCTGA TGCTGCCGGT GGAGGTGCGC ATCCTGCCCA CCTACAAGGT GCTGTCCGAT CTGAACATGC TGAACACCTA CGCGGGCCTC ACGGTGCCGC TGATCGCGTC GGCCACCGCC ACCTTCCTGT TCCGCCAGTT CTTCCTGACG GTGCCCGACG AGCTCACCGA GGCCTCGCGC ATGGATGGCG CAAGCCCCAT GCGCTTCTTC TTCGACGTGC TGCTGCCGCT GTCGAAGACC TCGATTGCGG CGCTGTTCGT GATCCAGTTC ATCTACGGCT GGAACCAGTA CCTCTGGCCG CTGCTCGCCA CCACCGGCGA AGACATGTAC CCCGTGGTGG TCGGCATCAA GCGAATGATT GCCGGCGGCG ACAGCCAGAA CGAATGGAAC GTGGTGATGG CCACCGCCAT CCTCGCCATG CTGCCGCCCG CGCTGGTGGT GGTGCTGATG CAGAAGTGGT TCGTCAAGGG CCTCGTGGAC ACTGAGAAAT AG
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Protein sequence | MVEKRGTHGI LAHVVMILGV FIVAFPLYLA FVASTHTAQE IVQAPMPLLP GTNMLDSYKG ALFGRETSSG SNAPVAHMMW VSLVTALVIS IGKISISLLS AFAIVYFRFP FKKICFWAIF VTLMLPVEVR ILPTYKVLSD LNMLNTYAGL TVPLIASATA TFLFRQFFLT VPDELTEASR MDGASPMRFF FDVLLPLSKT SIAALFVIQF IYGWNQYLWP LLATTGEDMY PVVVGIKRMI AGGDSQNEWN VVMATAILAM LPPALVVVLM QKWFVKGLVD TEK
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