Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4080 |
Symbol | |
ID | 7974402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4324759 |
End bp | 4325397 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644794666 |
Product | transferase; LpxA family |
Protein accession | YP_002945959 |
Protein GI | 239817049 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1207] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.796207 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGAATG CCATCGATCT CACCGTCTAC ATCGCCGGCT TTGCCGCCTC GCCGCTCGCG CGCTGGGGTG GGCTGGCGCC CTGGGAAATC ACCGCGCGGG CGGCGGAAAT CGTCCGCGAA CTGCTCGCGG CGCTGCCGGC AGGCGAATTT GCCGTCGAAG GCGAAGTGGC GATCCACCGC AGCGCCACCG TGGAAGCCGG CGCAGTGCTG AAGGGGCCGT TGATCATTGG CGCCGGCTGC TTCGTGGCGG CCGGCGCCTA TCTGCGCGGC GGCAACTGGG TGGGCGAGCG CTGCACCCTC GGCCCGGGCT CGGAGCTCAA GTCGTCCTTC GTCTTCGCGG GCACGGCCCT TGCGCACTTC AATTTCGTCG GCGATTCGGT GCTGGGCGCA GGCGTGAACC TGGAGGCCGG CAGCATCGTC TGCAACCACC GCAACGAGCG TGCCGCCAAG CAGATCTTCG TGCGAGCCGG CGAGGGCGGC GCATTGCAGG CCACGGGCAG CGAGAAGTTC GGCGCGCTGG CGGGCGACGG CGTGCGCATC GGTGCCAACG CGGTGATCGC GCCCGGCGCG CTGCTGCGTC CCGGCCTCGT GATCGCCCGC GCTTCGCTGC TCGACCAGGA GTTGCCGGAC CCCCAGTGA
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Protein sequence | MPNAIDLTVY IAGFAASPLA RWGGLAPWEI TARAAEIVRE LLAALPAGEF AVEGEVAIHR SATVEAGAVL KGPLIIGAGC FVAAGAYLRG GNWVGERCTL GPGSELKSSF VFAGTALAHF NFVGDSVLGA GVNLEAGSIV CNHRNERAAK QIFVRAGEGG ALQATGSEKF GALAGDGVRI GANAVIAPGA LLRPGLVIAR ASLLDQELPD PQ
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