Gene Vapar_4078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4078 
Symbol 
ID7974400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4322862 
End bp4323578 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content68% 
IMG OID644794664 
Productperiplasmic protein-like protein 
Protein accessionYP_002945957 
Protein GI239817047 
COG category[S] Function unknown 
COG ID[COG3698] Predicted periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAGC TGCTGCTCCT GCTGGCCCTG TGCCTGGCCG GCGCGGCCAG CATGGCCTCC 
GCGGCTGCCG CCGAACCGCG CTACACCGTC GTGAAGATCG ACGTGCGCCG CGAGCGGCTC 
GAGTTGTTCC TGCACGATGA CAGCGGCGCC CCGTTCAAGC GCTTCGACCG CCTCGAAGCC 
TGGCTCGCCG CGCGCAACCG GCAGCTGGTG TTCGCGATGA ACGCCGGCAT GTACCACGCG 
GACTTTTCCC CGGTCGGCCT GCTGGTGCAG GAGGGACGCG AGGAGGCGCC GCTCAACCTG 
GCGGCGGGTG CGGGCAACTT CTTCCTCAAG CCGAACGGCG TGTTCCTGGT GTCCGATGCG 
GGGCCGCGCG TGGTCGAGTC GTCCGAATAT GCGGCGCTGC CGAAAGAGGG CGTTCGGCTG 
GCGACCCAGT CGGGCCCGCT GCTGCTGCGC CGCGGCGTGG TGCATCCCGC CTTCATCCCG 
GATTCCGATT CGCGCAAGAT CCGCAACGGC GTGGGCGTGT CGGGCCACAC GGCGATCTTC 
GTGATCAGCG AGCAGCCGGT GAACTTCTAC GAGTTCGCGC TCTACTTTCG CGACGTGCTG 
CATTGCCGCG ACGCGCTCTA CCTCGACGGC ACCGTGTCGG CACTGCATTC GCTTGCCTTG 
CGGCGCAGCG ACTTCACCAG GGAGCTGGGA CCGATACTCG GCGTGGCGGT GCCGTGA
 
Protein sequence
MRKLLLLLAL CLAGAASMAS AAAAEPRYTV VKIDVRRERL ELFLHDDSGA PFKRFDRLEA 
WLAARNRQLV FAMNAGMYHA DFSPVGLLVQ EGREEAPLNL AAGAGNFFLK PNGVFLVSDA 
GPRVVESSEY AALPKEGVRL ATQSGPLLLR RGVVHPAFIP DSDSRKIRNG VGVSGHTAIF 
VISEQPVNFY EFALYFRDVL HCRDALYLDG TVSALHSLAL RRSDFTRELG PILGVAVP