Gene Vapar_3914 details

Gene Information

• Locus tag: Vapar_3914
• ID: 7970343
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4152526
• End bp: 4153050
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644794500
• Product: TrapT family, DctQ subunit C4-dicarboxylate transport
• Protein accession: YP_002945794
• Protein GI: 239816884
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGCCC GGTCCGTCCG CTACATGGAC CGCGCGATCA ACACGATCGA ATGGCTTGCC 
GCCATCTTCG TGGGGATCGT CGCGCTCAAC ATCTTCGTGG CCGTGGTGCT GCGCAAGTTC 
TTCGACACCT CGATCCCCGA CGCCTACGAC TTCGGCCGCA TGCTGCTGGG CATCCTGATC 
TTCTGGGGCA TCGCGGCCAC CAGCTACCGC GGCGGCCACA TCACGGTCGA CCTCGTGTGG 
ACGGCCGCGG GTCCGCGCAT GAAGCGCGTG ATCGACGTGT TCGCCACGCT GGTGCTGCTG 
TTCGTGGTGG CGGTGCAGAC GGCCATGCTG TTCGACAAGG TGCGCGGCAC CTACGTGGAC 
AACGTGCTGA CCTACGACAT GAATATTCCG ACCTGGCCGT TCTATGCCGT GGCCTGGGCC 
GGCGACGTCT GTGCGGTGCT GCTGATCGCC ATCCGCACCT ATCGGCTGAT CTTCCATCCC 
GAGCAGCTGG AAGAAGTCCA CGCTGAACAG AAAGCCGATG AATGA 

 

Protein sequence

MAARSVRYMD RAINTIEWLA AIFVGIVALN IFVAVVLRKF FDTSIPDAYD FGRMLLGILI 
FWGIAATSYR GGHITVDLVW TAAGPRMKRV IDVFATLVLL FVVAVQTAML FDKVRGTYVD 
NVLTYDMNIP TWPFYAVAWA GDVCAVLLIA IRTYRLIFHP EQLEEVHAEQ KADE