| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3893 |
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| Symbol | |
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| ID | 7970322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4124940 |
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| End bp | 4126097 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644794479 |
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| Product | ThiJ/PfpI domain protein |
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| Protein accession | YP_002945773 |
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| Protein GI | 239816863 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0556761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGAGAT CGATAGGAGC GCTGATCGGT GCAAGTATTG CAGCCTTTGC GCTGGCGGGC
TGCACGGGGG GCGCGCCGCC GCTGCCGCCC GCGCCGGCCG ATGCGGCGCG CAGCGAGCGC
GAGAAGCAGG CCTTCGTCGA GGCGCTGAAG CCGCTTCGCG CCGGCCGGCC CGTGGTGGCC
GTGCTCGCGC TGAACGAAGG CACCGAGATG ACCGACCTGC TGCTGCCGCA TGCGGTGCTC
CGGCGCGCCG ATGTGGCCGA GGTGCGGATC GTGGCGCCGC GCGCGGGGCG CGTGAGCCTG
TATCCCGCAC TCGAGGTCGA TGGCGCGCAG GACTTTGCCG CATTCGACCG GCTTCATCCC
GCAGGGCCCG ACTACGTGAT CGTGCCGGCG ATGATCGCCG ACGACAACCC TGAGGTGGCG
GCCTGGCTCC AGCAGCAGGC GGCGCGCGGT GCACGGGTGA TCGGCGTCTG CTCGGGCGCG
CGCGTGGTCG GCCGCGCCGG CCTGCTCGAC GGCCGGCGCT TCGCGGGCCA CTGGTACGAC
CGCAGCACGC TGCTCGAACG CCACCCCGGC GCCAGCTACG TGCCGCACCA GCGCTACGTG
GTGGACCGCG GGGTTGCCAC CACCACCGGC ATCACCGCCT CGGTGCCGGC CATGCTGGCG
CTGGTGGAGG CGATCGGCGG GCCAGAGAAA GCCAGGGCCC TTGCAACGGA ACTCGGCGTG
GCTTCATGGA CGCCGGTGCA CGACAGTTCG CCGTTCTACC TGGACACCGG CCGCAGGGTG
GATTTCCTGC TCAACAAGGC CGCGTTCTGG CGCGGCGAGC ATTGGCGCGT GGATGTGCAG
GACGGCGCCG ACGACATCGC CCTGGCGCTG GCCGTCGATG CGTGGACGCG CACCGGGCAC
ATCGGCGTCG ATGCCGCATC GGCCGCGGGC CCGGTCAGGC TGCGCAGCGG GCTGGTGCTG
CTGGCGCAGC CGCCCCGCGA AGGAACGGAG CGCCTGCCGC TCTCTTCGTC GCTGAAGCCG
GTGCCGCAGC TGGACCGCAC GCTGTGCGAG ATCGGCGAGC GCTATGGCGC GGCGCGGCGC
GACTGGGTCA TGCTGGAGAT GGAATACCCG GCGGCCTCGG TTGCAGCAGC CTGCGGGGGT
GGGCGGCCGG CTGCATGA
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| Protein sequence | MWRSIGALIG ASIAAFALAG CTGGAPPLPP APADAARSER EKQAFVEALK PLRAGRPVVA
VLALNEGTEM TDLLLPHAVL RRADVAEVRI VAPRAGRVSL YPALEVDGAQ DFAAFDRLHP
AGPDYVIVPA MIADDNPEVA AWLQQQAARG ARVIGVCSGA RVVGRAGLLD GRRFAGHWYD
RSTLLERHPG ASYVPHQRYV VDRGVATTTG ITASVPAMLA LVEAIGGPEK ARALATELGV
ASWTPVHDSS PFYLDTGRRV DFLLNKAAFW RGEHWRVDVQ DGADDIALAL AVDAWTRTGH
IGVDAASAAG PVRLRSGLVL LAQPPREGTE RLPLSSSLKP VPQLDRTLCE IGERYGAARR
DWVMLEMEYP AASVAAACGG GRPAA
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