| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3867 |
|---|
| Symbol | |
|---|
| ID | 7969724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4096515 |
|---|
| End bp | 4097312 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794453 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002945747 |
|---|
| Protein GI | 239816837 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.685954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGCCG CCGCAACAAC GGCAGATGCA GGCGTGCGCC AGGCCGGCGC GCACATCGAC
ATCCGCGGCG TGAGCCATTG GTTCGACGTG CCCGCGGGGC CGCTGCAGGT GCTCGACGAC
ATCGACCTCT CGGTGAAGCC CGGCGAGTTC GTCGCGCTGC TGGGACCGAG CGGCTGCGGC
AAGTCGACGC TGCTGCGCCT GGTGGCCGGG CTCGAGCCCG CCACGGCCGG CCGCATCACG
CAGGACGATG CGCCCATCAC GCGGCCCGAC CCGTCGCGCA TCGTCGTGTT CCAGGACCCG
ACGCTCTACC CCTGGCGCAG CGTGTGGGAC AACGTGGCGC TGGGCCTGCA GGCGCGCGGC
GTGCTCAAGG CGCAGCGCGG GCGCGTCGAC GAGGCGCTGA AGCTTGTCGG CCTCAGCGAC
TTTGCCAAGG CCTTTCCGCA CCAGCTCTCG GGCGGCATGG CACAGCGCGT GGCACTGGCG
CGTGCGCTGG TCAACGATCC GCAACTGCTG GTGCTCGACG AGCCGCTCGG CAAGCTCGAT
TCGCTCACGC GCATCGCGAT GCAGAGCGAG CTGGTCAACC TGTGGCAGCG CGCGGGCTTC
TCGGCGCTGC TGGTGACGCA CGATGTGGAA GAGGCGCTGT TCCTCGCCAA CCGCGTGATC
GTGCTGAGCG ACCGGCCGGC GCGCATTGCG GCGGAGATCG TGGTCGACCT GCCGTATCCG
CGGCACCGTG GCCATGCGCG TTTGGCGCAA TTGCGGCACG AAGCGTTGCG GCATTTGGGG
CTCGACGCCA CCTGGTGA
|
|---|
| Protein sequence | MVAAATTADA GVRQAGAHID IRGVSHWFDV PAGPLQVLDD IDLSVKPGEF VALLGPSGCG
KSTLLRLVAG LEPATAGRIT QDDAPITRPD PSRIVVFQDP TLYPWRSVWD NVALGLQARG
VLKAQRGRVD EALKLVGLSD FAKAFPHQLS GGMAQRVALA RALVNDPQLL VLDEPLGKLD
SLTRIAMQSE LVNLWQRAGF SALLVTHDVE EALFLANRVI VLSDRPARIA AEIVVDLPYP
RHRGHARLAQ LRHEALRHLG LDATW
|
|---|
| |