| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3855 |
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| Symbol | |
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| ID | 7969712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4079062 |
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| End bp | 4080375 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794441 |
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| Product | protein of unknown function DUF21 |
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| Protein accession | YP_002945735 |
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| Protein GI | 239816825 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.469597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTC TCCTGCTGGC CTTGCTGACC ACGCTGAATG CGTTGTTTGC GATGTCCGAA
ATGGCCCTTT CAACCAGCCG GCGTGCGCGC CTGGCAGCAC TGGCCGAGAC GGGCGATACC
GGGGCGGAGG CCGCGCTCCG GCTGATGGAG GAGCCGACCC ACTTCCTGTC GACCGTGCAG
ATCGGCATCA CCTCCATCGG CATGCTCAGC GGTATCGTGG GCGAGGCCGC CTTCGCGGCG
CCGCTCGCGG TCTGGATGGA GAATCTGGGG ATGGGCCGCG GCACGGCCAG CGTGGTGTCC
ACCGCGGTGG TGGTGACCGG CATCACCTTC TTCACCATCA TCTTCGGCGA GCTGGTGCCC
AAGCGGATCG GCCAGCTCTA CCCGGAACCC GTGGCGCGCT GGGTGTCGCG CCCGATGCGC
AGTCTTGCCA AGGGCGCCAA GCCGTTCGTC TGGCTGCTCG CGAGCGCCAC GGCCGCCGTG
CTGAAGCTGC TGCGCATCGA CGCCAATGCC GCGCGCTCCA TGACCGAGGA AGAAATCTCG
GCCAGCCTGG AAGAGGGCGT GGACGCCGGC GTGATCGAGC AGCACGAGCA CCAGATGGTG
CGCAACGTGT TCCACCTGGA CGACCGCCGG CTGTCGTCGC TGATGATCCC GCGCGCCGAC
ATCGAATGGC TCGACGCCTC CGACACGGTG GCCGAGGCGC TGCAGAAGGT GGCCGACGCC
GGCGCGCTCA ACCTGGTGCA TTCCTGGTAC CCGGTGTGCC GCAACTCGCT CGACGACGTG
GTCGGCGTGA TCAGCGTGGC GCACCTGCTG CGCCTTGGCA CCGGCCATGT CGGCGTGCTG
GGCCAGGAAG CGGCGCCGGC CGTGTTCGTG CCCGAGACGC TCACCGGCAT GGAGCTGCTC
GAGCAATTCC GCGAACGCGG CGGCCGGCTG GTGTTCGTGG TCGACGAATA CGGCGTGGTG
CAGGGCCTCA TGACGCCGCG CGACATGCTC GAGGCCATCA CCGGCGAACT GCAGCCCGGC
ACGCTGACCG ACGCCTGGGC GCGCGAGCGG CCCGACGGCG TGTGGGAGCT CGACGGGCTG
ATGCCGGTGT CGGAACTGCG CGCGAGGCTC GGCATCCGCG AGCTGCCGGA AGAAGAGCGC
GGGCGCTACA ACACCGTGGC CGGCCTGCTG ATGGCCGTTT CCGGCCACCT GCCCAAGACC
GGCGAAGTCA TCGACTGCGC GGGCTGGCAT TTCGAGATTG CCGCGCTCGA GGGGCGCCGC
ATCGACCGGG TGCTGGCCAC GGCCGACAAG TCGGCATCGA CGATGGACGA CTAG
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| Protein sequence | MDVLLLALLT TLNALFAMSE MALSTSRRAR LAALAETGDT GAEAALRLME EPTHFLSTVQ
IGITSIGMLS GIVGEAAFAA PLAVWMENLG MGRGTASVVS TAVVVTGITF FTIIFGELVP
KRIGQLYPEP VARWVSRPMR SLAKGAKPFV WLLASATAAV LKLLRIDANA ARSMTEEEIS
ASLEEGVDAG VIEQHEHQMV RNVFHLDDRR LSSLMIPRAD IEWLDASDTV AEALQKVADA
GALNLVHSWY PVCRNSLDDV VGVISVAHLL RLGTGHVGVL GQEAAPAVFV PETLTGMELL
EQFRERGGRL VFVVDEYGVV QGLMTPRDML EAITGELQPG TLTDAWARER PDGVWELDGL
MPVSELRARL GIRELPEEER GRYNTVAGLL MAVSGHLPKT GEVIDCAGWH FEIAALEGRR
IDRVLATADK SASTMDD
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