| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3853 |
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| Symbol | |
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| ID | 7969710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4075156 |
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| End bp | 4078323 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644794439 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_002945733 |
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| Protein GI | 239816823 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.229574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGA CCTTCCGAAC CCTCTGGAAT CCGGCGCTCG GCGCATGGGT GGCCGCGCCG
GAAATCGCAC GCGGCCATGT GCGCACGACC GGCCTGCATG CCGTTGCCAT GGCGGTGCTG
TGCCTGGGTG CCGGCCCGAC CCTGGCCCAG GGCGGCGCAG GCGGCCAGCC GGTGGACAGC
GCGCTGCACG CCGGCACCGG CGGCAGCAAC GGCAGCGGCG GCGCGGGCGG ACTCAATGAC
ACCTCCGTTG CAGCGCATGG CGGCGACGGC GGATCGTCGA CCGACGCCGC GGTCACGGCG
GGCTCCGCCG CCGACGTCGG GAGTTTCAGC GGCGCCACCG CGGGCGCGGG CGGTGCGGCG
GGCAGCTCCA GCACCGTCGT CTCCCCCGGC GTGCTGCAGG GAGCCAGCGG CGGCGCGGGC
CAATCGCAGA CCGGCGATTT CAGCAACGGC AATGGATACG GCGGCGGGGG CGGCGGCGGC
TACTACGGCC TTTTGCTGGG CTCCAGCACC TTCGCGTCGT CCGGCAGCTA CACCGGCGGC
AGCGGAGGCG CGGGCGGCAA CGGCTACTGG GCGGCCGGCG GCGGCGGCGC CGGCGGCTAC
GGCTCCGTGC TGATCGGCCC GCTCAGCAAC TACGACGCCT TCGGCTCTTC CGTGGGCGGC
ACCGGCGGCA ACGGTGGCAA TGCTTATTCG CAGGGCGGCG GCGGCGGCAG TGGCGGCGGC
GGATTCTTCA TCAGCGCGGC AACGCCGGGC CTCGGCTTCG GCAACAGCGG CACGCTCGCG
GGCGGTGCCG GCGGCGCGGG CGGGTCCGAA CTTCTGCCGG CCCGAAGCAA TGCCGCGGGC
GGCGGCGGCG GCGCGGGCGG CGCCGGTGCC ACGCTGGCCG GCAGCACCCT CGACGTGACC
AACACCGGCC AGATCACCGG CGGCGCCGGC GGCGCTGGCG GTGCGGGCGG CGGCGGCGCG
GGCGGCACCG GTGCGCCCGG CGGCGGCGGC GACGGCGGCG TGGGCCTTCT CTCCACCGGC
AGCGGCGCGG CGATTGCCAA CAGCGGCACC ATCGCCGGCG GCGCGGGCGG CACCGGCGGG
GCCAACAGCA ACGGCGGCGC AAGCGGCGCG CCCGGCGCCG GCGGCGCCGG CATCGCGGGC
GCCAACCTGA ACATCAGCAA CAGCGGCAGC ATTTCAGGCG GCCTTGGCGG CGACGGCGCC
ACGCGCGCAC CGGCCGTGGC GTTCACCGGC GGCAGCAACA GCCTGACCGT GAACACCGGC
TCGTCGATGC TGGGCGCCAT TGCCATCGGA AGCGGTGCCA GCGCCAGCGT GATCGCCGGC
GCCGACGGCC TGAGCCTGGA CAACGCACTG CTGCTGGGCG GCACGGGCAC CATCGACACC
AACGGCCACG GCCTGGGCTG GTCGGGCCCG ATCTCGGGCG CCGGCGACCT GGTGAAGGTC
GGCGCGGGCA CGCTCACCCT GAGCGGCACC AACACGAACA CCGGCGCCAC CAACGTCGCG
GCCGGCACCC TGCGCGCCGG TGCGGCCGAC ACGCTCAGCA GCGCGAGCGC CTTCACCGTC
AACGCGGGCG CCACGCTCGA CCTGGCGGGC CATAGCCAGA CGATCGCATC GATGGCCAAC
AGCGGCATCG TCTCCCTGCT GAGCGGCACG CCCGGTGCCA CCCTCACGGT GCACGGCCCC
TGGGTGGGCA ACGACGGCAC GCTGCGCCTG GGCACGGCGC TGGGCAACAG CGCCAGCCTG
AGCGACCGGC TGATCCTCTG CGGCACCACC GCCATTGCCA GCGGCACCAC CAACATACAG
GTCACCAACC TGGGCGGCCT GGGCGCGCTG ACCATCGGCA ACGGCATCGA AGTGGTGACC
GCGATGAACG GCGCCACCAC CACGGCGCAG ACCACCCGCG ATGCCTTCCG CCTGGCAGGC
GGCCACGTCG ACGCCGGCGC CTACGAGTAC CGGCTGCACG CCGCCGACGC GACCGGCGCG
GGCGAGAACT GGTACCTGCG CTCCGGCGTC ATCGTCGTGC CGCCGCCTCC TCCCCCACCG
CCTCCGCCGC CTCCGCCACC TGCACCACCG GCGCCGCCCG CGCCACCGGC ACCACCTGCA
CCACCTGCAC CACCAGCACC CCCTGCGCCT GCGCCGGGCG ACGGCGGCAC CCCGCGAAGC
AGCGACGGCG GCTTCCCGCC TGGGGGCGTG ACGGTGCCCA CCTACCGTGC CGAAGTCCCG
CTGTATGCGG CGCTGCCCGA GCAGTTCCGC CAGTCCAACC TGGCCATGGT GGGCAACCTC
CACCAGCGCG TGGGCGACGA CGGCACGGCC GGCCTTGCCA CGGCCACGCC CGAGCAGGGC
TACCGCCAGG GCTGGGCCCG CATCATCAGC ATGGACCGCA CCATCGGCCA GGCCGGCACC
GTGAGCCCCA CCAGCAAGGG GCGCCTCACA GGCTTCCAGG CCGGCAACGA CCTGTGGGCC
GATCCCAACT GGCGCGTCGG CATCTATGTC GGCCAGCTCG ACGGCGACAT GCGCGTGAAC
GGCTTTGCCC GCGGCGTGCA GGGCTATGGG GTCGGCTCGA GCGACCTGCG CAGCCAGTAC
CTGGGCGCCT ATGCCACCTG GAAGAACGAC AGCGGCCTGT ACGTGGACGG CGTGCTGCAG
GCCGGGCGCC ACCGCTACAC CGCGGCCACC ACGCTGGGTT CGGCCGGCTC GGGCAAGGGC
CACAGCCTGC TGGCCTCCAT CGAGGTGGGC CAGGGCTTCC ACATCTCGCC GGAGTGGATC
GTCGAGCCGC AATTGCAGCT GGTGCACCAG CACGTGAGCC TGGACGACGC CGGCATCATC
GGCGCGGTGG TGCAGCAGCA CAGCCACAGC GGCTGGCTGG TGCGCGCCGG CGTGCGGGTC
AAGGGCGAGA TGACCACCAG CGCCGGCCCG CTGCAGCCCT ATGCGCGGCT GAACCTCTAC
CGCAGCAGCA GCGGCACGGA CGTCACGCGC TTCATCGGCC CCGCGGCCTA TACCGACATT
GCCACCCGCA CCGGCGGCAC GAGCACCGAA CTGGCGGCCG GCGCCACGCT GCAGCTCACG
CAGAGCATGA GCCTGTATGG CGAGGTCGGC AAGTTCTGGG CCTCGGGCGG CGACGCGCGC
ATGAAGAGCG GCGTGAATGC CAGCGTGGGC CTGAAGATCC GCTGGTGA
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| Protein sequence | MNKTFRTLWN PALGAWVAAP EIARGHVRTT GLHAVAMAVL CLGAGPTLAQ GGAGGQPVDS
ALHAGTGGSN GSGGAGGLND TSVAAHGGDG GSSTDAAVTA GSAADVGSFS GATAGAGGAA
GSSSTVVSPG VLQGASGGAG QSQTGDFSNG NGYGGGGGGG YYGLLLGSST FASSGSYTGG
SGGAGGNGYW AAGGGGAGGY GSVLIGPLSN YDAFGSSVGG TGGNGGNAYS QGGGGGSGGG
GFFISAATPG LGFGNSGTLA GGAGGAGGSE LLPARSNAAG GGGGAGGAGA TLAGSTLDVT
NTGQITGGAG GAGGAGGGGA GGTGAPGGGG DGGVGLLSTG SGAAIANSGT IAGGAGGTGG
ANSNGGASGA PGAGGAGIAG ANLNISNSGS ISGGLGGDGA TRAPAVAFTG GSNSLTVNTG
SSMLGAIAIG SGASASVIAG ADGLSLDNAL LLGGTGTIDT NGHGLGWSGP ISGAGDLVKV
GAGTLTLSGT NTNTGATNVA AGTLRAGAAD TLSSASAFTV NAGATLDLAG HSQTIASMAN
SGIVSLLSGT PGATLTVHGP WVGNDGTLRL GTALGNSASL SDRLILCGTT AIASGTTNIQ
VTNLGGLGAL TIGNGIEVVT AMNGATTTAQ TTRDAFRLAG GHVDAGAYEY RLHAADATGA
GENWYLRSGV IVVPPPPPPP PPPPPPPAPP APPAPPAPPA PPAPPAPPAP APGDGGTPRS
SDGGFPPGGV TVPTYRAEVP LYAALPEQFR QSNLAMVGNL HQRVGDDGTA GLATATPEQG
YRQGWARIIS MDRTIGQAGT VSPTSKGRLT GFQAGNDLWA DPNWRVGIYV GQLDGDMRVN
GFARGVQGYG VGSSDLRSQY LGAYATWKND SGLYVDGVLQ AGRHRYTAAT TLGSAGSGKG
HSLLASIEVG QGFHISPEWI VEPQLQLVHQ HVSLDDAGII GAVVQQHSHS GWLVRAGVRV
KGEMTTSAGP LQPYARLNLY RSSSGTDVTR FIGPAAYTDI ATRTGGTSTE LAAGATLQLT
QSMSLYGEVG KFWASGGDAR MKSGVNASVG LKIRW
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