| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3850 |
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| Symbol | |
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| ID | 7969707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4072527 |
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| End bp | 4073975 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794436 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_002945730 |
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| Protein GI | 239816820 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.885926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTGT CCGGCACTGC CTCCTTCTCC GCACCGCAAC CGCAGCCGCA GCCCCCGAGC
CGGCCCTACG ACCCGCGCTA CGACCCGCTG GTCGCGCCCG ATCCCGGCGC CGGCCGCGCC
TATGCGCCCA CCTGGTGGGT GGCCAGCGCC GGCACGCCGC CGGAGGACGA CGGCCCGCTC
GTGCACGACA TCGATGTCGA CGTGGCCATC ATCGGCTCGG GCGCCACCGG CATGTCGACC
GCGCTCTACC TGGCGCAGGA GCACGGCATC CAGGCGACGG TGCTCGAGGC CAACCAGGCG
TCGTGGGGCT GCTCCAGCCG CAGCGGCGGC CAGGGGCAGA ACGCGAGCGG CCGGCTCAAG
CGCTCGCAGT GGATCCAGCG CTGGGGCCTG GACACCGCCC GGCGGCTCGA CGCCGAGATC
CGCGGCGGCT TCGAGAATTT CAAGCAGCTC ACGACGCAGA TCGACTGCGA CGCCTTCGAT
GGCGGCCATC TCTACCTGGC GCACCGGCCC GAAAAGCTCG CGGTGCTCGA GGCCGAGGCG
CGCGTGATGC GCGAGCAGTT CGGCTACGCC ACGCGCATGC TGACGGCCGA AGAAGTGCGG
CGCGACTACT GCGACGAGCG CGAGGCGGCC GGCGCCATGT TCGAGCCCGA AGGCGTGGGC
ATCCACCCGC TGAAGTTCAC CTTCGGCCTG ATGCGCAAGG CCCGCGCGCT GGGCGTGAAG
GTGCACACCT CGAGCCCCGT GCAGGGCTGG CAGACCATCG ACGGCGTGCA CCACCTGCAG
ACGCCCGGCG GCGTGGTGCG CGCGCGCCGC GTGGCGGTGT GCACCGGCGG CTACACCGGG
CAGGCGCTGA GCCCGCTCCT GAAGAACCGC ATCATGCCGA TCCTCTCCAA CTCGGTGGTC
ACGCGCCCGC TCACCGAGGC CGAGCTGCAG GCCACCAACT TCAGGTCGCA GACCTTCCTG
ACCGACACGC GCACGCTGCG CTTCTACTAC CGGCTGCTCA AGGGCAACCG GCTGCAGATC
GGCAGCCGCA GTTCGGTGAG CGGCGCCGAC GCCGAGCACC CGGTGCACCT GAAGCTGCTC
ACCGACGCCA TCGCGCGCAA GTTCCCGCCG CTCGCGGGCA TCCGCATCGA CTACTCGTGG
TGGGGCTGGG TCGACATGAG CCACGACATG ATGCCGCGCA TCACGCAGCC CGAGGCGGAC
CGGAAGATCT GGTATGCGGT GGGCTACGGC GGCAACGGCG TGTCCTTCTC GACCTGGGCC
GGCAAGCGGC TGGCCGAGCG CGTGGCCGGC AAGGACACGG GCAAGGACGT GTTCGAGCTT
CCGATCTACA AGTCGGCGCT GCCCTTTCCC AATGTGCTGG GGATGGTGGA ATCGCCCGCC
TTCGCGCCGT TCCGGCGCAT CGGCCAGCGC ATGCTCTACA AGTGGTATTG GCTGCGCGAC
GAGAAGTAG
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| Protein sequence | MTLSGTASFS APQPQPQPPS RPYDPRYDPL VAPDPGAGRA YAPTWWVASA GTPPEDDGPL
VHDIDVDVAI IGSGATGMST ALYLAQEHGI QATVLEANQA SWGCSSRSGG QGQNASGRLK
RSQWIQRWGL DTARRLDAEI RGGFENFKQL TTQIDCDAFD GGHLYLAHRP EKLAVLEAEA
RVMREQFGYA TRMLTAEEVR RDYCDEREAA GAMFEPEGVG IHPLKFTFGL MRKARALGVK
VHTSSPVQGW QTIDGVHHLQ TPGGVVRARR VAVCTGGYTG QALSPLLKNR IMPILSNSVV
TRPLTEAELQ ATNFRSQTFL TDTRTLRFYY RLLKGNRLQI GSRSSVSGAD AEHPVHLKLL
TDAIARKFPP LAGIRIDYSW WGWVDMSHDM MPRITQPEAD RKIWYAVGYG GNGVSFSTWA
GKRLAERVAG KDTGKDVFEL PIYKSALPFP NVLGMVESPA FAPFRRIGQR MLYKWYWLRD
EK
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