| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3771 |
|---|
| Symbol | |
|---|
| ID | 7970931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3988294 |
|---|
| End bp | 3988647 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794358 |
|---|
| Product | Endoribonuclease L-PSP |
|---|
| Protein accession | YP_002945653 |
|---|
| Protein GI | 239816743 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCCA TCACACGCTT CCACGTCGGC CCGCGCCTGT CCGAAACAGC CGTGCACAAC
GGCACCATCT ACCTCGCGGG CCAGGTGCCC GACGACACCA CGCAGGACAT CCGCGGCCAG
ACCACCCAGG TGCTGGCCAT GGTCGACCGC CTGCTCGCCG AGGCCGGCAG CGACAAGTCG
CGCATCCTCA TGACGCAGAT CTTCCTGGCC GACATCACCG ACATCGCGGC CATGAACGAG
GTGTGGGATG CCTGGATTCC CGCCGGCAAC ACCCCGCCGC GCGCAACGGT GCAGGCCAAG
ATGGCCAATG CAGCCTACAA GATCGAGATC GTCGTCACGG CCGCCCAGGC CTGA
|
|---|
| Protein sequence | MASITRFHVG PRLSETAVHN GTIYLAGQVP DDTTQDIRGQ TTQVLAMVDR LLAEAGSDKS
RILMTQIFLA DITDIAAMNE VWDAWIPAGN TPPRATVQAK MANAAYKIEI VVTAAQA
|
|---|
| |