| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3717 |
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| Symbol | |
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| ID | 7973950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3915472 |
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| End bp | 3917580 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794301 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002945599 |
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| Protein GI | 239816689 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.429203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCCA ATTTCCGTCG CAACGCCATC GGCGCTGCCG TTCTTTCGCT GGCCTCCTTC
GCGGCCATGG CCCAGGCCCA GCCTCAACCC GCGCTCCAGG CGCAGCCCGC CGAAGCGGCC
CCGCCGGCCC TGCCGGAGAT CGCCGTCACC GGCAATCCGC TGGGCGCGAG CGAACTGATC
GCACCCACCA CCACGCTCTC GGGCGACAGG CTCCTGATGC GCTCCGAATC GACGCTCGGC
CAAACGCTGG ACAACCTGCC CGGCGTGAGC AGCAGCTACT TCGGCCCCAA TGCCAGCCGG
CCGATCATCC GCGGGCTGGA CGGCGACCGC ATCCGCATCC TGCAGAACGG CGGCGGCGCG
CCCGACGCCT CGTCGCTGAG CTACGACCAC GCGGTGCCGA TGGACGCGCT GGTCACCGAA
CGCGTCGAGG TGCTGCGCGG CCCGTCGGCG CTGCAGTACG GCGGCAGCGC GGTGGGCGGC
GTGGTCAACG TGATCGACAA CCGCATTCCG AGCGAGCCGA TCAACGGCTT CGGCGGCCGT
GCCGACCTGG GCTTTTCCAC CGGCAACAAG GAAAAGAACG GCGGCGTGGT GCTCGAAGGC
GGCAACGACC GCTTCGCGCT GCACGTCGAT GCGTTCAACC GCGACTCCCA GGATGTCTCG
GTGCCCATCG ACCTGGAATG CAGCAAGCCC GGCCGGCCCT GGCTCGCGCG CAAGATCTGC
AATTCGGCCA ACGAGGCGCA TGGCGGCGCG GTGGGCGGCA CGCTGTTCTT CGACCAGGGC
TGGATCGGCG CCTCGGCCAG CACCTACCGC AGCACCTACG GCACCGTGGC CGAGGACGAT
GTGACCATCG GCATGAAGTC CGACCGCCAG GCCATCGAAG GCGAGTGGCG CCCGGGCGGC
TTCATCAGCA GCATCCACGC CAAGGCCAGC CACACCAACT ACCGCCACAC CGAGTACGAA
GGCGGCGAGG CCGGCACCAC CTTCTCGAAC CTGAGCAACG ACCTGCGCAT CGAGGCGCGC
CACCAGAAGA TCGGCAACTT CGAGGGCCTG GTCGGTTTCA GCAGCGAGAG CAACCGCTTT
GCCGCGGACG GCGCGGAAGC CTTTGCGCCG CACAGCCGCA CGCGCTCGAA TGCGCTGTTC
CTGTACGAGG AACTCGGCAC GTCGTGGGGC CGGCTGAGCT TTGGCGCGCG CACCGAGAAG
GTCCGCGTCA GGTCGCTCGG CTATCCCGAC GATCCGACCG TGACGCGCTT TGCCATCGGC
GAACGCACGT TCAACCCGCA CAGCGCGGCC GTGGGCGCGC TGGTCAACCT GGCGCCGCAG
TGGCAGCTCA CCTCGAACCT GGCCTACACC GAGCGCGCAC CGAAGGACTA CGAACTGCTC
GCCAACGGCC CGCACGTGGC AACGGCGGCC TGGGAGGTCG GCAACCCGAA CCTCGACAAG
GAAAAGTCGG TCGGCTTCGA CCTCGGCGCG CAATGGAAGT CGAGTGCCAA CACGGCCCGC
GTCAACGCCT ACGTCACGCG CTTTCGCAAC TACATCGGCC TGACGGCATC GGGCCGCACG
CTCGACGAAG AAGGCCAGGT GGTGACCGAC CCCGAAGCCA CCGACACGCT GGCCGAGTAC
CTCTACAGCG GCGTGCGCGC GCGCTTCACC GGCATCGAGG CGAGCGGCAA CCTGCGCCTC
CTGGGCACCG ACGGTTTCGG GCGGCTGGCC GATGCCGCGA CGCTGGACTT CGAATGGCGC
GGCGACGTGG TGCGTGCCAA GAACCTCGAC ACCGGCGAGC CGCTGCCGCG CATCGCGCCG
TTCCGCGCGG GCGCGACCCT GGCCTACGGC AACGGCCCCT GGAGCGCACG CTTCGGCTTC
GACTACAACG CCGCGCAGCG CCACGTGCCG AGCGTGGGCG CGCGCGAAAC CGATGCCTAC
ACGCTCTGGA ATGCCTCGAT CGCCTACCGC ATGAAGGTGC AGCGCGCCAA CCTCACCTGG
TATGCGCGCA TCGACAACAT CACCAACAAG CTGGCCTACA GCCCGACCTC GATCCTGACG
ACGACGGTGT ACCCCAACGC GCCGCTGCCG GGGCGCTCGC TGAAGGTCGG CCTGCGCGTG
ACCTTCTGA
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| Protein sequence | MIPNFRRNAI GAAVLSLASF AAMAQAQPQP ALQAQPAEAA PPALPEIAVT GNPLGASELI
APTTTLSGDR LLMRSESTLG QTLDNLPGVS SSYFGPNASR PIIRGLDGDR IRILQNGGGA
PDASSLSYDH AVPMDALVTE RVEVLRGPSA LQYGGSAVGG VVNVIDNRIP SEPINGFGGR
ADLGFSTGNK EKNGGVVLEG GNDRFALHVD AFNRDSQDVS VPIDLECSKP GRPWLARKIC
NSANEAHGGA VGGTLFFDQG WIGASASTYR STYGTVAEDD VTIGMKSDRQ AIEGEWRPGG
FISSIHAKAS HTNYRHTEYE GGEAGTTFSN LSNDLRIEAR HQKIGNFEGL VGFSSESNRF
AADGAEAFAP HSRTRSNALF LYEELGTSWG RLSFGARTEK VRVRSLGYPD DPTVTRFAIG
ERTFNPHSAA VGALVNLAPQ WQLTSNLAYT ERAPKDYELL ANGPHVATAA WEVGNPNLDK
EKSVGFDLGA QWKSSANTAR VNAYVTRFRN YIGLTASGRT LDEEGQVVTD PEATDTLAEY
LYSGVRARFT GIEASGNLRL LGTDGFGRLA DAATLDFEWR GDVVRAKNLD TGEPLPRIAP
FRAGATLAYG NGPWSARFGF DYNAAQRHVP SVGARETDAY TLWNASIAYR MKVQRANLTW
YARIDNITNK LAYSPTSILT TTVYPNAPLP GRSLKVGLRV TF
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