Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3685 |
Symbol | |
ID | 7973918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3885369 |
End bp | 3886220 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644794269 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002945567 |
Protein GI | 239816657 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGCT GGACCCCCAA GGCCATAGCG ACCGAGGCCA AGCTGCTGCT GATCGGCATT CCGGTGCTGC TCTGGACGCT GATTCCGGTC TACCACATGG TGCTGTTCGC GATCTCCTCC AAGGACTCCG CGACCTCGGG CCACCTGTGG CCCAAGAACC CGACGCTGGA CAACTTCCGC ATCGTGTTCC AGCAGAAGCA CTTCTACCTC GACCACTTCT GGCTGCAGCT GGGGAACTCG CTGCTGATCG CACTGTCGGT CGGGGCGCTC ACGCTGTTCG TCGCAACCAC GGCCGCGTTC GCGATCAGCC GGCTGCGCGT GCGCGGCGGG CGCACGGTGA TGAACCTGGC GCTCTTCACC TACTTCATTC CCGCGGCCTT TCTTGCCGTG CCCATGTACA AGACCATGGG CAACTACGGC CTGCTCAACA GCCAGTGGGC GCTGATCCTT GCCATGGTGA CCATCGCCTC GCCGTACTGC ATCTGGGTGC TCAAGCAGGC CTCCGACAAG CTGCCCTACG AGCTCGACGA GGCCGCGCGC ATGGATGGTG CCTCGCCGCT GCAGCTGTTC CGCCTGGTGT ACCTGCCGCT GATGGTGCCG TCGCTGGTGG CGGTGGGCAC CTATTCGCTG CTGCTGGCAT GGAACGAATA CCTCTACGCC TTCCTGCTGC TGTCGAACGA CAGGAGCGTG ACCTTGGCGG TGGCGCTCGG CAACTTCCTC TCGGCCGACG ATTCGCCGTG GGAGCTGCTG ATGGCCACCG GCCTCATCTA TGCATTGCCG CCCGCGGCGA TCTACTACGC CTTCAAGCGC TACATGGTGG GCGGCCTCAC TGCAGGCGCC GTCAAGAGCT GA
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Protein sequence | MKRWTPKAIA TEAKLLLIGI PVLLWTLIPV YHMVLFAISS KDSATSGHLW PKNPTLDNFR IVFQQKHFYL DHFWLQLGNS LLIALSVGAL TLFVATTAAF AISRLRVRGG RTVMNLALFT YFIPAAFLAV PMYKTMGNYG LLNSQWALIL AMVTIASPYC IWVLKQASDK LPYELDEAAR MDGASPLQLF RLVYLPLMVP SLVAVGTYSL LLAWNEYLYA FLLLSNDRSV TLAVALGNFL SADDSPWELL MATGLIYALP PAAIYYAFKR YMVGGLTAGA VKS
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