| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3626 |
|---|
| Symbol | |
|---|
| ID | 7970701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3836392 |
|---|
| End bp | 3836841 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794211 |
|---|
| Product | ferric uptake regulator, Fur family |
|---|
| Protein accession | YP_002945509 |
|---|
| Protein GI | 239816599 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0735] Fe2+/Zn2+ uptake regulation proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCC TCACGCGCCA ACGCAACGCG GTCTTCTCGG CCTTCAGCGA CACCGGCCTG
GTGCTGACCG CACCTGAAAT CCTCGAGCGC GCCCGCGCCA TCGTGCCCGA GATCAGCCTC
TCCACCGTGT ACCGCCAGGT CTCCATGCTG CTGGCCGACG GCGAGATCGC CAAGGTCGAG
CTGCCCGGCG AGCCGGCGCG CTACGAAGTG GCCTGCAAGC CCGATGCGCA CCGCCATTCG
CACCAGCACG GCGAAGAGGC CGACCATCAC CATCACTACT TTCACTGCAG CAGCTGCGGG
CAGGTCTTCA TGCTGCATGC CTGCCCCGGG CCGATGACCG ATCTTGTGCC CAAGGGCTTC
CAGGTGAAAA GCCATGAAGT GACGCTGCAC GGCGTGTGCG CGGCCTGCGC CGGTGCCGCC
CGCAAGGCGC GGTCGCCCAA GGCCCACTGA
|
|---|
| Protein sequence | MQRLTRQRNA VFSAFSDTGL VLTAPEILER ARAIVPEISL STVYRQVSML LADGEIAKVE
LPGEPARYEV ACKPDAHRHS HQHGEEADHH HHYFHCSSCG QVFMLHACPG PMTDLVPKGF
QVKSHEVTLH GVCAACAGAA RKARSPKAH
|
|---|
| |