| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3607 |
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| Symbol | |
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| ID | 7970682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3815774 |
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| End bp | 3818965 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794192 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_002945490 |
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| Protein GI | 239816580 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0170104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCCT CCCGCCCCTT CATCGAACGG CCGGTGGCCA CGGCGCTGCT GATGGTCGCC
ATCGTGCTGG CCGGCCTCGT GGGCCTGCGG CTCCTGCCGC TGGCCGCGCT GCCGCAGGTC
GACTACCCGA CCATCCAGGT GCAGACCCTC TACCCCGGCG CCAGCCCCGA GGTCATGAGC
CGCACCGTCA CGGCTCCGCT GGAGCGCCAG TTCGGCCAGA TGGCGGGGCT CAACCGCATG
AGCTCGGTGA GCTCGGCGGG CGTGTCGATC GTCACGCTGC AGTTCGCGCT CGACCAGACG
CTGGACGTGG CCGAGCAGCA GGTGCAGGCC GCCATCAACG CCGGCGGCTC GCTGCTGCCG
GCCGACCTGC CGGCGCCGCC CGTGTACGCC AAGGTGAACC CGGCCGACGC GCCCATCCTC
ACGCTGGCCG TGAGCTCCGG GACCATGCCG CTCACCGAGG TGCAGAACCT CGTGAACACA
CGGCTCGCGC AGAAGATCAG CCAGGTCGGC GGCGTGGGGC TGGTGTCGCT TTCGGGCGGG
CAGCGGCCGG CCGTGCGCAT CCAGGCCGAC ACCAACGCGC TCGCGTCGGT GGGCATCGGG
CTGGACACGC TGCGCAGCGC GATCACCGCG GCCAACGCCA ACAGCGCCAA GGGCAGCTTC
GACGGACCGC GGCGGGCCTA CACCATCAAT GCCAACGACC AGCTCGTGAC GGCGGACGAC
TACAAGAACC TGATCGTCGC CTGGAAGAAT GGCGCGCCGG TGCGCATGAC CGACGTGGCG
CGCGTGGTCG ACGGTGCCGA GAACACACAG CTGGGCGCAT GGGCCGCATT GCGCGCGGGC
GAGCGGGAAC CCGTGCTGTA CCCGGCCATC ATCCTTAACG TGCAGCGCCA GCCCGGCGCC
AACGTGATCG GCACGGTCGA TGCCATCAAG AAGCAGCTGC CCGAGCTGCA GGCCTCGCTG
CCGGGCTCGC TCAAGGTGGA GGTGCTGAGC GACCGCACCA CCGGCATCCG CGCCTCGGTC
TCGCACGTGC AGCTGGAGCT CGGGCTGGCC GTGGTGATGG TGGTGCTGGT GATCTTCTTC
TTCCTGCACA GCGTGCGCGC CACGGTCATC GCCAGCCTGG CGGTGCCGAT CTCGCTCGTG
GGCACCTGCG GGCTGATGTA CCTGCTGGGC TACAGCCTCA ACAACCTGAG CCTGATGGCG
CTGACCATCG CCACCGGCTT CGTGGTGGAC GACGCGATCG TGATGATCGA GAACATCGCG
CGCTACCTGG AGGAGGGCGA CCCGCCGTTC AAGGCCGCGC TCAAGGGGGC CACGCAGATC
GGCTTCACCA TCATCTCGCT CACGGTGTCG CTGATCGCGG TGCTGATTCC GCTCTTGTTC
ATGGGCGACG TGGTGGGGCG GCTGTTCCGC GAGTTCGCGG TCACGCTGGC CATCACCATC
CTGATCTCCG CCGTGGTGTC GCTCACGCTG GTGCCGATGA TGTCGGCGCG CTGGCTCAAG
CCGCAGGCCG AGGAGGGCGG GCGCTTCGGG GCCAGCGTGC AGCGCCGCGA CGGCGACGGG
CCGCCCCTAG GCGGCGCAGC CCCCTCGGGG GGCAGAGAGC CACACGAAGT GGGCGAACGT
GGGGGCGGTT TCCTTGATCG CGTGATTGCG CGCTACGACG TGTGGCTGCA ATGGGTGCTG
CGCCACCAGC CGCTCACGCT GGTGGTGGCG GTGGCCACGC TGGCGCTCAC GGTGCTGCTC
TACGTGGTGA TTCCCAAGGG CCTGTTCCCG ACGCAGGACA CCGGCCAGCT GCAGGCGCGC
ATCGAGGCCG CGCAGGACGT GTCGTACACG CGCATGGCCG AGCTGCAGCA GCAGGCCGCC
AACGCGATCC TGGCCGACCC CGAGGTGGCC AGCGTGAGCT CGGTGGTGGG CGTGGACGCC
GCCAACAACA CGGCGCTGAA CACCGGCAGC ATGCTCATCA ACATGCGCGC CGACCGCGGC
AACCAGGAAG CCACGATGCA GCGCCTGCGC GAGCGCGTGC GCGCCGTGGC CGGCGTCACG
CTGTACCTGC AGCCCACGCA GGACCTGACC ATCGACGCCG AGACCGGCCC CACCGAATTC
CGCGTCTCGC TCGAAGGGGT GGACACCAAC ACCGTCGACG CCTGGGCGCA GAAGCTGGTG
GAGCGCCTGC GCACCGAGCC GCTGGTGCGC AACCCCACCA CCAACGCGGG TGCGAAGGGC
CTGGCCGCCT ACGTGGACAT CGACCGCAAC ACGGCCTCGC GCCTCTCGGT CACGGCCAGC
TCGGTGGACG ACACGCTCTA CAGCGCGTTC GGCCAGCGCA TCGTCTCGAC CATCTTCACC
GAGACCAACC AGTACCGCGT GATCCTGGAA GCGCAGCGCG AGGCATTGGC CTCGCCGCAG
CTCCTGGGCA ACCTGCAACT GCGCACCGGC GGCGGCAGTG CCACCACGCT CTCATCGATT
GCCACGGTGC GCGAGCAGGC CGCGCCGCTG CAGGTGACGC ACGTGGCGCA GTACCCGGCC
GCCACCGTGG GCTTCGACAC GGCCGACAAC GTGGCGCTCG GAAAGTCGGT GGCGGCCATT
CGCGCGGCGG CCAAGGAGAT CGGCATGCCC GCGAGCATGA CCATGAGCTT CCTGGGCGCG
GCGGGGGCCT ACGAGAAATC GCTTTCCAAC CAGCTGTGGC TGATCCTGGC GGCGGTGGTG
TGCGTGTACA TCGTGCTGGG CGTGCTGTAT GAGAGCTACA TCCATCCGCT GACGATTCTC
TCGACACTGC CTTCGGCCGG CGTGGGCGCG CTGCTCGCGT TGATGGTCAC GGGCAACGAC
CTGGGCGTGA TCGGCATCAT CGGCATCATC CTCTTGATCG GCATCGTCAA GAAGAACGCG
ATCATGATGA TCGACTTTGC CATCGACGCC GAGCGGCGCG AGGGCAAGTC GCCGCAGGAG
GCCATCCACC AGGCGGCGCT GCTGCGCTTC CGGCCCATCC TCATGACCAC GCTGGCGGCG
CTTTTTGCGG CGCTGCCGCT GATGTTCGGC TGGGGCGAGG GGGCCGAGCT GCGCCGGCCG
CTGGGCCTGG CCATCTTCGG CGGGCTGGTG GTGAGCCAGG TGCTCACGCT CTTCACCACG
CCGGTGGTCT ACCTGGCCTT CGACCGCATG GGCCGGCGCT TCGGGCGCAA GCGGGAGGCC
GCAGCCGCAT GA
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| Protein sequence | MSPSRPFIER PVATALLMVA IVLAGLVGLR LLPLAALPQV DYPTIQVQTL YPGASPEVMS
RTVTAPLERQ FGQMAGLNRM SSVSSAGVSI VTLQFALDQT LDVAEQQVQA AINAGGSLLP
ADLPAPPVYA KVNPADAPIL TLAVSSGTMP LTEVQNLVNT RLAQKISQVG GVGLVSLSGG
QRPAVRIQAD TNALASVGIG LDTLRSAITA ANANSAKGSF DGPRRAYTIN ANDQLVTADD
YKNLIVAWKN GAPVRMTDVA RVVDGAENTQ LGAWAALRAG EREPVLYPAI ILNVQRQPGA
NVIGTVDAIK KQLPELQASL PGSLKVEVLS DRTTGIRASV SHVQLELGLA VVMVVLVIFF
FLHSVRATVI ASLAVPISLV GTCGLMYLLG YSLNNLSLMA LTIATGFVVD DAIVMIENIA
RYLEEGDPPF KAALKGATQI GFTIISLTVS LIAVLIPLLF MGDVVGRLFR EFAVTLAITI
LISAVVSLTL VPMMSARWLK PQAEEGGRFG ASVQRRDGDG PPLGGAAPSG GREPHEVGER
GGGFLDRVIA RYDVWLQWVL RHQPLTLVVA VATLALTVLL YVVIPKGLFP TQDTGQLQAR
IEAAQDVSYT RMAELQQQAA NAILADPEVA SVSSVVGVDA ANNTALNTGS MLINMRADRG
NQEATMQRLR ERVRAVAGVT LYLQPTQDLT IDAETGPTEF RVSLEGVDTN TVDAWAQKLV
ERLRTEPLVR NPTTNAGAKG LAAYVDIDRN TASRLSVTAS SVDDTLYSAF GQRIVSTIFT
ETNQYRVILE AQREALASPQ LLGNLQLRTG GGSATTLSSI ATVREQAAPL QVTHVAQYPA
ATVGFDTADN VALGKSVAAI RAAAKEIGMP ASMTMSFLGA AGAYEKSLSN QLWLILAAVV
CVYIVLGVLY ESYIHPLTIL STLPSAGVGA LLALMVTGND LGVIGIIGII LLIGIVKKNA
IMMIDFAIDA ERREGKSPQE AIHQAALLRF RPILMTTLAA LFAALPLMFG WGEGAELRRP
LGLAIFGGLV VSQVLTLFTT PVVYLAFDRM GRRFGRKREA AAA
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